Hi David,

I actually ended up using the python distools instead. However, the viewer flickers =\ Below is the log when starting up PyMol over X-windows from a Mac OS X 10.6.x client.  Anyone encounter similar issues?

Detected OpenGL version prior to 2.0.  Shaders unavailable.
 OpenGL graphics engine:
  GL_VENDOR: ATI Technologies Inc.
  GL_RENDERER: ATI Radeon HD 2600 OpenGL Engine
  GL_VERSION: 1.4 (2.1 ATI-1.6.26)
 Adjusting settings to improve performance for ATI cards.
 Detected 16 CPU cores.  Enabled multithreaded rendering.
 OpenGL quad-buffer stereo 3D detected and enabled


Paul Rigor

On Wed, Apr 6, 2011 at 3:07 PM, <lists@cowsandmilk.net> wrote:
I found the ce_types.h problem happens with autotools, but not with setup.py method.


On Apr 6, 2011, at 5:59 PM, Paul Rigor <paul.rigor@uci.edu> wrote:

Hi all,

So I tried compiling the 1.4b today and came across a couple of issues.
1) The layer3/Executive.c is attempting to include "ce_types.h" locally but the header file is actually under 'modules/cealign/src'

2) With a quick hack, I was able to compile. However, when attempting to run the binary, I get the following error:
    ImportError: /lv_disk00/preserve/tmp/pymol/modules/pymol/_cmd.so: undefined symbol: _ZNSs4_Rep20_S_empty_rep_storageE

However, it seems that there is no missing library dependency (quick check with ldd).

Has anyone run into any of these issues. I'm running python 2.6 on a CentOS 5.5 distro on a 64-bit machine.


Paul Rigor

On Mon, Apr 4, 2011 at 6:07 AM, Tru Huynh <tru@pasteur.fr> wrote:
Hi Jason,

On Mon, Apr 04, 2011 at 08:19:17AM -0400, Jason Vertrees wrote:
> As you have discovered, and I forgot to mention, Python 2.5 or later
> is now required.  This is due to 64-bit types using Py_ssize_t.

If the patch is the only thing needed to support "Py_ssize_t" for python 2.4
please consider adding it for "backport".



Dr Tru Huynh          | http://www.pasteur.fr/recherche/unites/Binfs/
mailto:tru@pasteur.fr | tel/fax +33 1 45 68 87 37/19
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