I find HOLLOW (http://hollow.sourceforge.net/) to be quite good.

On Fri, Dec 3, 2010 at 12:15 PM, Thomas Evangelidis <tevang3@gmail.com> wrote:
Dear Pymol users,

I want to display clearly the volume of a buried cavity inside my protein. Does anybody know how to do this? I've tried CastP and Caver plugins already, but they do not produce exactly the volume I want to display. I would greatly appreciate any advice.

thanks,
Tom

------------------------------------------------------------------------------
Increase Visibility of Your 3D Game App & Earn a Chance To Win $500!
Tap into the largest installed PC base & get more eyes on your game by
optimizing for Intel(R) Graphics Technology. Get started today with the
Intel(R) Software Partner Program. Five $500 cash prizes are up for grabs.
http://p.sf.net/sfu/intelisp-dev2dev
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net



--
Michael Lerner, Ph.D.
IRTA Postdoctoral Fellow
Laboratory of Computational Biology NIH/NHLBI
5635 Fishers Lane, Room T909, MSC 9314
Rockville, MD 20852 (UPS/FedEx/Reality)
Bethesda MD 20892-9314 (USPS)