thank you Thomas, 

It worked  for me  :) 



On Tue, May 18, 2010 at 3:23 PM, Thomas Holder <speleo3@users.sourceforge.net> wrote:
use the PISA web service, you can upload a PDB file there and get
detailed summary for all interfaces in your complex.

http://www.ebi.ac.uk/msd-srv/prot_int/cgi-bin/piserver

Cheers,
 Thomas

On Tue, 2010-05-18 at 14:02 +0900, humayun scherrif wrote:
>
>
>
>
> I have tried to using the method described
> in http://muralab.org/~cmura/PyMOL/ , but I want to calculate the
> Dimer Interface area as compared to total area of the Dimer
>
>
>
>
>
>
>
> On Tue, May 18, 2010 at 1:41 PM, Edward A. Berry <BerryE@upstate.edu>
> wrote:
>         humayun scherrif wrote:
>                 Hello,
>
>                 I was wondering if anyone can tell me how to calculate
>                 the Dimer
>                 interface surface area ? Although I have seen related
>                 posts, but nothing
>                 work out well.
>
>
>         Then you need to say what you tried, and how it didn't work
>         out.
>         Otherwise you will get the same answers as in the previous
>         posts.
>         ed
>
>
>
>                 Thanks
>
>
>                 --
>                 Best Regards,
>
>                 Humayun Sharif


>
>
> --
> Best Regards,
>
> Humayun Sharif
> Research Assistant
> Protein Structure and Function Laboratory
> Gwangju Institute Of Science & Technology,
> Gwangju, 500-712, Republic of Korea
> Tel (Res) :+82-62-718-4176
> Tel (Lab) : +82-62-970-2549
> Email: hum.one@gmail.com


--
Thomas Holder
Group of Steffen Schmidt
Department of Biochemistry
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen




--
Best Regards,

Humayun Sharif
Research Assistant
Protein Structure and Function Laboratory
Gwangju Institute Of Science & Technology,
Gwangju, 500-712, Republic of Korea
Tel (Res) :+82-62-718-4176
Tel (Lab) : +82-62-970-2549
Email: hum.one@gmail.com