Dear Robert,
 
I downloaded the msms  2.6.1 from http://mgltools.scripps.edu/downloads#msms and installed into C:\Program Files\MSMS. But there are still something wrong after running the script:
 
There seems to be a problem with the msms output
 
Traceback (most recent call last):
  File "C:\Program Files\DeLano Scientific\PyMOL/modules\pymol\parser.py", line 250, in parse
    self.result=apply(layer.kw[0],layer.args,layer.kw_args)
  File "C:/Program Files/DeLano Scientific/PyMOL/msms_pymol.py", line 282, in calc_msms_area
    volume,area_dict,tmp_msms_vert_file,tmp_msms_face_file = calc_msms(object_name,probe,density,keep,debug)
  File "C:/Program Files/DeLano Scientific/PyMOL/msms_pymol.py", line 159, in calc_msms
    sys.exit(1)
SystemExit: 1
 
My pymol version is 1.1r1 with python 2.4.2 (#67, Sep 28 2005, 12:41:11) [MSC v.1310 32 bit (Intel)]
 
As a beginner of pymol, thank you for your kindly help.
 
regards
 
Sujuan