Hi Gillean,

For what it's worth, I experienced the same... No dashes in the numbers:

1-1
1--1 L
1-2
2--1 L
2-3
3--1 L
...

etc.

The double dash must come from the "-1" value used as default for your SSE class. Better double check what's going on there :)

Cheers,

Tsjerk




On 10/9/07, gilleain torrance <gilleain.torrance@gmail.com > wrote:
Hi Frieda,

That's odd. It seems to work okay for mulitchain proteins (I'll add
some extra bits to handle chains).

The "--" in the output is weird. It suggests that either the start
numbers end in a dash or the end number start with a dash. It's
difficult to diagnose the bug, if bug there is, without the input
data.

What structure are you using this on? Does it happen with other structures?

gilleain

> Hi Gilleain,
>
> I tried pasting in the code at the first link, followed by
> ss my_object
> where my_object is the name of an object in the file,
> and the output looks like this:
> 1-1
> 1--1 S
> 1-2
> 2--1 S
> 2-3
> 3--1 S
> 3-4
> ...etc.
>
> Am I using ss incorrectly?
>
> For the second link above, I do not know what command(s) to issue after I
> paste in the code.
>
> Thanks for your help,
> Frieda
>
>
>
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> Frieda Reichsman
>
> Molecules in Motion
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--
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931    
F: +31-30-2537623