Hi Buz (and everyone)

The biopython package together with Bizkit (http://biskit.pasteur.fr/) claim to be able to do this sort of thing (see: http://biskit.pasteur.fr/use/workflows/homology-modelling), and will chew up your processor rather than someone else's!  

Marcus Collins


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Marcus D. Collins
NIH NRSA Postdoctoral Fellow
Departments of Physics and Chemistry
University of Washington