Hi, professor Holder,

Thank you for the reply, but how can I do this on the level of individual amino acids in stead of atom? I have two homolog stuctures and I want to map the difference between the b factors of the corresonding residues of these two stuctures rather than individual atoms. And I want to use gradually deepened color from white to blue. Could you explain more in detail? Thanks.  

Yeping Sun

Institute of Microbiology, Chinese Academy of Sciences


------------------------------------------------------------------
发件人:Thomas Holder <speleo3@users.sourceforge.net>
发送时间:2013年12月10日(星期二) 04:50
收件人:孙业平 <sunyeping@aliyun.com>
抄 送:pymol-users <pymol-users@lists.sourceforge.net>
主 题:Re: [PyMOL] gradually changed colors with flexibility

Hi Yeping,

use the spectrum command:

PyMOL> spectrum b, blue_white_red

http://pymolwiki.org/index.php/Spectrum

Cheers,
Thomas

On 09 Dec 2013, at 11:30, sunyeping <sunyeping@aliyun.com> wrote:

> Dear all,
>
> I want to show amino acids in a structure according to their flexibility (B factor) by gradually changed colors. Can pymol do this? Thanks.
>
> Yeping Sun
>
> Institute of Microbiology, Chinese Academy of Sciences

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