Hi all,

I am a doctoral candidate of bioinformatics and working on protein-protein interaction.At present I come across with a problem that given a protein-protein complex(from PDB or molecular docking),I need a software to indentify their interactions,which means this program could find out the atom pairs that forms H-bonds each other,and the residues pairs forming electrovalent bond by its internal algorism,after the input of the PDB file.Still I hope these interations can be showed visually.I tried VMD but it couldn't finish that.So I turn to pymol for help.Could pymol satisfy my requirement? Thanks a lot for any help.

Best wishes,
Stanley





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