Hello all, Warren,


I have a script which creates two pseudoatoms and a bond object between them, but the bond step consistently fails. However, the two pseudoatoms can be bound in the console after the script halts with the exact same command which fails in the script:

cmd.bond("temp0////A0","temp0////B0")

Alternatively, cmd.do("bond temp0////A0, temp0////B0") fails just the same.

The following works perfectly:
PyMOL>python
1:cmd.pseudoatom("temp",pos[0,0,0],name="A")
2:cmd.pseudoatom("temp",pos[0,0,5],name="B")
3:cmd.bond("temp////A","temp////B")
PyMOL>python end

So can anyone tell me why the exact same thing in a script halts after 2?


Thanks,
Stuart Ballard
Dept. of Biochemistry
University of Wisconsin-Madison