hi,
good idea, it runs from the command line after adding
/pymol/ext/lib to my library path

but the plugin still crashes.
something is odd about my APBS plugin setup.
if i even just click to change the file locations
it crashes.

the other plugins seem fine.

thanks
jpd


From: "Schubert, Carsten [JRDUS]" <CSCHUBER@its.jnj.com>
To: jp d <yoyoq@yahoo.com>; "pymol-users@lists.sourceforge.net" <pymol-users@lists.sourceforge.net>
Sent: Tuesday, February 11, 2014 12:14 PM
Subject: RE: [PyMOL] apbs plugin

Hi jpd,
 
try running APBS directly just using the .in file generated from a failed run. That may provide a clue as to where the problem is, i.e. within APBS itself or within the plugin. If it is APBS, which is throwing the error you may want to try to grab an updated version or the source code to compile yourself.
 
HTH
 
Carsten
 
From: jp d [mailto:yoyoq@yahoo.com]
Sent: Tuesday, February 11, 2014 2:52 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] apbs plugin
 
hi,
anyone else having trouble with the apbs plugin?
i keep crashing as soon as i try to do anything.
if i select 'Choose externally generated PQR'
or 'run APBS' i get this
In show error 1
alloc: invalid block: 0x2aaaac29fb78: 0 0
Abort
 
this is with pymol 1.7
ubuntu 12.04
using 1FAS fetched from the pdb
 
thanks
jpd