Ok - thank you for your answer.

 

I was thinking if it is then possible to multiply the part of the molecule (but with new atom numbers) that I want to give the highest priority in the PDB file – would this bias the alignment towards the selected part of the molecule?

 

Best regards

Magnus

 

From: Warren DeLano [mailto:warren@delsci.com]
Sent: 19. januar 2009 23:09
To: Magnus Franzmann; pymol-users@lists.sourceforge.net
Subject: RE: [PyMOL] weighted alignment

 

Magnus,

 

No, there isn’t any provision for weighting at present, but thank you for the suggestion!

 

Cheers,

Warren

 


From: Magnus Franzmann [mailto:maf@bio.aau.dk]
Sent: Monday, January 19, 2009 5:00 AM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] weighted alignment

 

Dear all

 

I would like to perform an alignment of two molecules with parts of the molecules weighted differently. Is this possible in pymol?

 

Best regards

Magnus Franzmann