#37 fetch electron density from eds

closed
5
2011-04-04
2009-03-23
cbiertue
No

Similarly to the fetch feature for pdb files, it would be nice to have a function to download electron density maps from the electron density server: http://eds.bmc.uu.se/eds/ . This would make structure analysis easier for users who are interested in looking into density maps directly. The command could look like this:

fetch_eds pdb_code, map_format, map_type, object_name

The map type would be either 2mFo-DFc or mFo-DFc (maybe keywords: 2fofc, fofc). The map format could be ccp4 as default and cns as an option. I am not should if pymol can handle o or ezd formats.

Thanks,
christian

Discussion

  • Jason Vertrees
    Jason Vertrees
    2011-04-04

    • assigned_to: nobody --> inchoate
    • status: open --> closed
     
  • Jason Vertrees
    Jason Vertrees
    2011-04-04

    Implemented.

    fetch 1rx1, type=2fofc
    fetch 1rx1, type=fofc