Each time you run a python file that defines a class, the outline view collapses the method tree back to the class's root node. This is annoying because you have to go back and expand all the things you want expanded after every run.
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Whoops. My mistake - the view collapses each time you add a new method to the class, and then save it, NOT when you run it.
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Fixed for 1.3.11 (sometimes it still collapses, but on most common cases it should be able to maintain its state).