Commit [r1755] Maximize Restore History

First implementation of a rapid-gather tool for BAM files (GatherBamFiles).

tfenne 2014-03-26

added /trunk/src/java/net/sf/picard/sam/GatherBamFiles.java
changed /trunk/build.xml
changed /trunk/src/java/net/sf/picard/io/IoUtil.java
changed /trunk/src/java/net/sf/samtools/BAMFileReader.java
changed /trunk/src/java/net/sf/samtools/SAMUtils.java
/trunk/src/java/net/sf/picard/sam/GatherBamFiles.java Diff Switch to side-by-side view
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/trunk/build.xml Diff Switch to side-by-side view
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/trunk/src/java/net/sf/picard/io/IoUtil.java Diff Switch to side-by-side view
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/trunk/src/java/net/sf/samtools/BAMFileReader.java Diff Switch to side-by-side view
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/trunk/src/java/net/sf/samtools/SAMUtils.java Diff Switch to side-by-side view
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