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[Phenoscape-curators] Build failed in Jenkins: build-phenoscape #472
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From: BBOP-Jenkins <je...@mi...> - 2015-05-24 01:16:58
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See <http://build.berkeleybop.org/job/build-phenoscape/472/changes> Changes: [cmungall] switching xrefs to consider for https://github.com/obophenotype/uberon/issues/542 [cmungall] obsoletions ------------------------------------------ [...truncated 1068 lines...] May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 348 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/UBERON_2000092> "teleost_anatomy_curators"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 349 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/UBERON_2000092> "uberon/phenoscape-anatomy"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 350 Expected white space at pos: 25 LINE: AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_2000092> "obsolete axis"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 351 Expected white space at pos: 24 LINE: Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_2000093>)) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 352 Expected white space at pos: 25 LINE: AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_2000093> "obsolete blastomere"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 353 Expected white space at pos: 24 LINE: AnnotationAssertion(owl:deprecated <http://purl.obolibrary.org/obo/UBERON_2000093> "true"^^xsd:boolean) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 354 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_2000093> "ZFA:0000093"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 355 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/UBERON_2000093> "teleost_anatomy_curators"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 356 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://purl.obolibrary.org/obo/core#provenance_notes> <http://purl.obolibrary.org/obo/UBERON_2000093> "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 357 Expected white space at pos: 37 LINE: AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "TAO:0000093"^^xsd:string) Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/core#PLURAL>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/UBERON_2000093> "blastomeres"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 358 Expected white space at pos: 37 LINE: AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ZFIN:curator"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_2000093> "A cell arising during cleavage; the term encompasses the partially cleaved, incomplete cells at the blastodisc margin before they collectively form the yolk syncytial layer (YSL) in the midblastula. Kimmel et al, 1995."^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 359 Expected white space at pos: 25 LINE: AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/UBERON_2000093> "Term already present in CL. For the subclasses, see http://purl.obolibrary.org/obo/cl/tracker/18"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 360 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0100001> <http://purl.obolibrary.org/obo/UBERON_2000093> "CL:0000353"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 361 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/UBERON_2000093> "uberon/phenoscape-anatomy"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 362 Expected white space at pos: 24 LINE: Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_2000096>)) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 363 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://purl.obolibrary.org/obo/core#provenance_notes> <http://purl.obolibrary.org/obo/UBERON_2000096> "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 364 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_2000096> "ZFA:0000096"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 365 Expected white space at pos: 25 LINE: AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_2000096> "cardinal system"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 366 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/UBERON_2000096> "teleost_anatomy_curators"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 367 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/UBERON_2000096> "uberon/phenoscape-anatomy"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 368 Expected white space at pos: 17 LINE: SubClassOf(<http://purl.obolibrary.org/obo/UBERON_2000096> <http://purl.obolibrary.org/obo/UBERON_0004537>) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 369 Expected white space at pos: 24 LINE: Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_2000098>)) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 370 Expected white space at pos: 37 LINE: AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "TAO:0000098"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/UBERON_2000098> "cell cycle"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 371 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/UBERON_2000098> "uberon/phenoscape-anatomy"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 372 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://purl.obolibrary.org/obo/core#provenance_notes> <http://purl.obolibrary.org/obo/UBERON_2000098> "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 373 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/UBERON_2000098> "teleost_anatomy_curators"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 374 Expected white space at pos: 37 LINE: AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "TAO:0000098"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/UBERON_2000098> "proliferation"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 375 Expected white space at pos: 37 LINE: AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "TAO:0000098"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/UBERON_2000098> "cell division"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 376 Expected white space at pos: 25 LINE: AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_2000098> "proliferative region"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 377 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_2000098> "ZFA:0000098"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 378 Expected white space at pos: 17 LINE: SubClassOf(<http://purl.obolibrary.org/obo/UBERON_2000098> <http://purl.obolibrary.org/obo/UBERON_0000477>) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 379 Expected white space at pos: 24 LINE: Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_2000102>)) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 380 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_2000102> "ZFA:0000102"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 381 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/UBERON_2000102> "uberon/phenoscape-anatomy"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 382 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/UBERON_2000102> "teleost_anatomy_curators"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 383 Expected white space at pos: 25 LINE: AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_2000102> "dorsal fin fold"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 384 Expected white space at pos: 37 LINE: AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "TAO:0000102"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/UBERON_2000102> "dorsal fin-fold"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 385 Expected white space at pos: 37 LINE: AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ZFIN:curator"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_2000102> "Region of the median fin fold that develops into the dorsal fin."^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 386 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://purl.obolibrary.org/obo/core#provenance_notes> <http://purl.obolibrary.org/obo/UBERON_2000102> "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 387 Expected white space at pos: 17 LINE: SubClassOf(<http://purl.obolibrary.org/obo/UBERON_2000102> <http://purl.obolibrary.org/obo/UBERON_0000481>) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 388 Expected white space at pos: 17 LINE: SubClassOf(<http://purl.obolibrary.org/obo/UBERON_2000102> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_2000040>)) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 389 Expected white space at pos: 24 LINE: Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_2000103>)) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 390 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/UBERON_2000103> "uberon/phenoscape-anatomy"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 391 Expected white space at pos: 37 LINE: AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "TAO:ga_tg"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_2000103> "Dermal bone that is located on the dorsal margin of the maxilla, usually at the dorso-posterior region of maxilla. The supramaxilla is a paired bone."^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 392 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://purl.obolibrary.org/obo/core#provenance_notes> <http://purl.obolibrary.org/obo/UBERON_2000103> "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 393 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/UBERON_2000103> "teleost_anatomy_curators"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 394 Expected white space at pos: 25 LINE: AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/UBERON_2000103> "The supramaxilla may be present as one or two bones."^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 395 Expected white space at pos: 25 LINE: AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_2000103> "supramaxilla"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 396 Expected white space at pos: 17 LINE: SubClassOf(<http://purl.obolibrary.org/obo/UBERON_2000103> <http://purl.obolibrary.org/obo/UBERON_0008907>) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 397 Expected white space at pos: 17 LINE: SubClassOf(<http://purl.obolibrary.org/obo/UBERON_2000103> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0003113>)) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 398 Expected white space at pos: 24 LINE: Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_2000104>)) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 399 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/UBERON_2000104> "teleost_anatomy_curators"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 400 Expected white space at pos: 37 LINE: AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "TAO:0000104"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/UBERON_2000104> "supraopercle"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 401 Expected white space at pos: 26 LINE: AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/UBERON_2000104> "uberon/phenoscape-anatomy"^^xsd:string) May 23, 2015 6:16:36 PM org.obolibrary.oboformat.parser.OBOFormatParser warn WARNING: LINE: 402 Expected white space at pos: 25 LINE: AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/UBERON_2000104> "Synonyms: 2015-05-23 18:16:36,685 INFO (ParserWrapper:74) Finished loading ontology: null from: <http://build.berkeleybop.org/job/build-phenoscape/ws/phenoscape-ext.owl> 2015-05-23 18:16:36,686 ERROR (CommandRunner:4141) could not parse:phenoscape-ext.owl org.semanticweb.owlapi.io.UnparsableOntologyException: Problem parsing <http://build.berkeleybop.org/job/build-phenoscape/ws/phenoscape-ext.owl> Could not parse ontology. Either a suitable parser could not be found, or parsing failed. See parser logs below for explanation. The following parsers were tried: 1) RDFXMLParser 2) OWLXMLParser 3) OWLFunctionalSyntaxOWLParser 4) TurtleOntologyParser 5) KRSS2OWLParser 6) ManchesterOWLSyntaxOntologyParser 7) OBOFormatOWLAPIParser Detailed logs: -------------------------------------------------------------------------------- Parser: RDFXMLParser org.xml.sax.SAXParseException; systemId: <http://build.berkeleybop.org/job/build-phenoscape/ws/phenoscape-ext.owl;> lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. -------------------------------------------------------------------------------- Parser: OWLXMLParser org.xml.sax.SAXParseException; systemId: <http://build.berkeleybop.org/job/build-phenoscape/ws/phenoscape-ext.owl;> lineNumber: 1; columnNumber: 1; Content is not allowed in prolog. -------------------------------------------------------------------------------- Parser: OWLFunctionalSyntaxOWLParser Encountered " <PN_LOCAL> "Obsoleted "" at line 680, column 1. Was expecting: ")" ... (Line 679) -------------------------------------------------------------------------------- Parser: TurtleOntologyParser uk.ac.manchester.cs.owl.owlapi.turtle.parser.ParseException: Encountered "" at line 1, column 1. Was expecting one of: -------------------------------------------------------------------------------- Parser: KRSS2OWLParser de.uulm.ecs.ai.owlapi.krssparser.ParseException: Encountered " <NAME> "Prefix "" at line 1, column 1. Was expecting: <EOF> -------------------------------------------------------------------------------- Parser: ManchesterOWLSyntaxOntologyParser Encountered Prefix at line 1 column 1. Expected one of: Rule: AnnotationProperty: Import: DisjointClasses: Datatype: DataProperty: DisjointProperties: DifferentIndividuals: Individual: Class: ObjectProperty: EquivalentClasses: SameIndividual: Prefix: ValuePartition: (Line 1) -------------------------------------------------------------------------------- Parser: OBOFormatOWLAPIParser LINENO: 403 - Could not find tag separator ':' in line. LINE: supraopercle (Roberts 1969) at uk.ac.manchester.cs.owl.owlapi.ParsableOWLOntologyFactory.loadOWLOntology(ParsableOWLOntologyFactory.java:242) at uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java:867) at uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java:778) at uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java:735) at owltools.io.ParserWrapper.parseOWL(ParserWrapper.java:172) at owltools.io.ParserWrapper.parseOWL(ParserWrapper.java:159) at owltools.io.ParserWrapper.parse(ParserWrapper.java:141) at owltools.cli.CommandRunner.runSingleIteration(CommandRunner.java:4129) at owltools.cli.CommandRunner.run(CommandRunner.java:316) at owltools.cli.CommandRunner.run(CommandRunner.java:308) at owltools.cli.CommandLineInterface.main(CommandLineInterface.java:12) Build step 'Execute shell' marked build as failure Archiving artifacts Failed to send e-mail to lmjackson because no e-mail address is known, and no default e-mail domain is configured Failed to send e-mail to cmungall because no e-mail address is known, and no default e-mail domain is configured |