Parallel implementation of BWA (http://bio-bwa.sourceforge.net/) using the OpenMPI library.
Features
- Parallel implementation of BWA's aln, sampe, and samse commands
- More efficient multithreading than BWA for aln
- Can combine parallelism and multithreading for aln
- Future releases will see sampe and samse given multithreading options
- Unfortunately, pBWA does not support gzipped input read files
License
MIT License, GNU General Public License version 3.0 (GPLv3)Follow Parallel BWA [pBWA]
Other Useful Business Software
Define and Deliver Comprehensive Cybersecurity Services. Security threats continue to grow, and your clients are most likely at risk. Small- to medium-sized businesses (SMBs) are targeted by 64% of all cyberattacks, and 62% of them admit lacking in-house expertise to deal with security issues. Now technology solution providers (TSPs) are a prime target. Enter ConnectWise Cybersecurity Management (formerly ConnectWise Fortify) — the advanced cybersecurity solution you need to deliver the managed detection and response protection your clients require. Whether you’re talking to prospects or clients, we provide you with the right insights and data to support your cybersecurity conversation. From client-facing reports to technical guidance, we reduce the noise by guiding you through what’s really needed to demonstrate the value of enhanced strategy.
Rate This Project
Login To Rate This Project
User Reviews
-
Easy for use.
-
Error when I try to install using make command: mpicc -g -m64 -O2 -DHAVE_PTHREAD -D_LARGEFILE64_SOURCE utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o bamlite.o main.o -o pBWA -lm -lz -lpthread -Lbwt_gen -lbwtgen /usr/bin/ld: cannot find -lbwtgen collect2: ld returned 1 exit status make: *** [pBWA] Error 1
-
Hi, how to install it? I run $ make in the folder and got these lines make[1]: Entering directory `/home/ruan/pkgs/pBWA' make[1]: Nothing to be done for `lib'. make[1]: Leaving directory `/home/ruan/pkgs/pBWA' make[1]: Entering directory `/home/ruan/pkgs/pBWA/bwt_gen' mpicc -c -g -Wall -m64 -O2 -DHAVE_PTHREAD -D_LARGEFILE64_SOURCE bwt_gen.c -o bwt_gen.o make[1]: mpicc: Command not found make[1]: *** [bwt_gen.o] Error 127 make[1]: Leaving directory `/home/ruan/pkgs/pBWA/bwt_gen' make: *** [lib-recur] Error 1