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mapping error

  • Adam English
    Adam English
    2014-01-10

    Hi,

    Can you ensure that your output in mapping/*.m4 is in the correct m4 format?
    Specifically, make sure that you didn't add a parameter about what the output format should be in the <blasr> tag of your protocol.xml

    The .m4 format is:
    qname tname score pctsimilarity qstrand qstart qend qseqlength tstrand tstart tend tseqlength mapqv