problem with Assembly step

  • Adam English
    Adam English
    2013-12-12

    The first behavior you're describing is a bug. I'll put in a ticket to get it fixed. If you want to see the assembly step's help, try
    Assembly.py --help

    Also, OLCAssembly doesn't work with SMRTAnalysis 2.1. PacBio Deprecated the Allora assembly engine, which previously was used by PBJelly.