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Commit [r31] Maximize Restore History

progress on restructuring

acenglishbcm 2014-04-01

changed /README.txt
changed /src/database/indices.sql
changed /src/database/schema.sql
changed /src/parliament/analysis/ovlCalls.py
changed /src/parliament/io/BedIO.py
changed /src/parliament/io/newDBIO.py
changed /src/parliament/utils/Distances.py
changed /src/parliament/utils/setupLogging.py
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/src/parliament/utils/Distances.py Diff Switch to side-by-side view
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/src/parliament/utils/setupLogging.py Diff Switch to side-by-side view
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