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I would like to use COBRApy to find and analyse gaps on SBML models. I was wondering if somebody had already ported the COBRA function in COBRApy ?
I found "gapAnalysis.py" in the oven folder but it doesn't seem to be baked yet ;-)
Is there any sample code to analyse gaps using COBRApy ?
Thank you for your help,
I'm not sure how stable the gapAnalysis code is, but there's example code at the bottom of the python file: https://github.com/aebrahim/cobrapy/blob/master/cobra/oven/aliebrahim/gapAnalysis.py
I'm not sure how detailed the examples or documentation are for gap analysis; I believe that Ali mostly coded them up so he could familiarize himself with the methods which is why it's not been baked.