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# Copyright (C) 2003,2004 Michael Creel michael.creel@uab.es
# under the terms of the GNU General Public License.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
# Copyright (C) 2003 Michael Creel michael.creel@uab.es
# under the terms of the GNU General Public License.
# The GPL license is in the file COPYING
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
# Copyright (C) 2003 Michael Creel michael.creel@uab.es
# under the terms of the GNU General Public License.
# The GPL license is in the file COPYING
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
# Standardizes and normalizes data matrix,
# primarily for use by BFGS
function [zz, scalecoefs] = scale_data(z);
n = rows(z);
k = columns(z);
# Scale data
s = std(z)';
test = s != 0;
s = s + (1 - test); # don't scale if column is a constant (avoid div by zero)
A = diag(1 ./ s);
# De-mean all variables except constant, if a constant is present
test = std(z(:,1)) != 0;
if test
warning("ScaleData: no constant present - only scale - no de-mean");
bb = zeros(n,k);
b = zeros(k,1);
else
b = -mean(z)';
test = std(z)' != 0;
# don't take out mean if the column is a constant, to preserve identification
b = b .* test;
b = A*b;
bb = dmult(b, ones(k,n))';
endif
zz = z*A + bb;
scalecoefs = {A,b};
endfunction