We need to write a simple java program to traverse ontology from OBO files.
If I go throught OBO-->OBOFormat-->OWLAPI, I am able to travese our
sample file in 12 seconds.
We are looking into owltools.
I am able to intall the GUI version, and it takes around 30 seconds to
parse an OBO file with around 35,000 records.
However, I am not able to install the command line version. I am able
to download from svn, but I cannot build the owltools-oort-all.jar,
because it could not find the project in directory OWLTools-Oort.
Could someone tell me where to get the project under OWLTools-Oort so
that I can build owltools-oort-all.jar?
Could someone tell me what is the best way to traverse ontology from OBO file?
Thank you very much for your help!