[Obo-phenotype-commits] obo/ontology/phenotype human_disease.obo, 1.449, 1.450 worm_phenotype.obo, 1.220, 1.221

[Seth C. <sjc...@us...>]

Update of /cvsroot/obo/obo/ontology/phenotype
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv27590/phenotype

Modified Files:
	human_disease.obo worm_phenotype.obo 
Log Message:
Automated file update

Index: human_disease.obo
===================================================================
RCS file: /cvsroot/obo/obo/ontology/phenotype/human_disease.obo,v
retrieving revision 1.449
retrieving revision 1.450
diff -C2 -d -r1.449 -r1.450
*** human_disease.obo	25 May 2013 08:54:12 -0000	1.449
--- human_disease.obo	28 May 2013 08:54:29 -0000	1.450
***************
*** 4623,103270 ****
  alt_id: DOID:4689
  def: "A respiratory system cancer that is located_in the paranasal sinuses." [url:http\://www.cancer.gov/cancertopics/pdq/treatment/paranasalsinus/Patient/page1]
! synonym: "adenocarcinoma of Accessory sinus" EXACT [NCI2004_11_17:C6017]
! synonym: "adenocarcinoma of paranasal sinus" RELATED []
! synonym: "adenoid cystic carcinoma of Accessory sinus" EXACT [NCI2004_11_17:C6019]
! synonym: "adenoid cystic carcinoma of paranasal sinus" RELATED []
! synonym: "carcinoma of Accessory sinus" EXACT [NCI2004_11_17:C6014]
! synonym: "carcinoma of paranasal sinus" RELATED []
! synonym: "Epidermoid carcinoma of the paranasal sinus" EXACT [NCI2004_11_17:C8193]
! synonym: "Mucoepidermoid carcinoma of Accessory sinus" EXACT [NCI2004_11_17:C6018]
[...98623 lines suppressed...]
! [Typedef]
! id: results_in
! name: results_in
! def: "Development process/cause and effect/disease progress,process." [DO:lh]
! 
! [Typedef]
! id: results_in_formation_of
! name: results_in_formation_of
! def: "Formation of structure,cancer,etc./cause and effect." [DO:lh]
! 
! [Typedef]
! id: transmitted_by
! name: transmitted_by
! def: "Pathogen is transmitted." [DO:lh]
! 
--- 4623,4625 ----
  alt_id: DOID:4689
  def: "A respiratory system cancer that is located_in the paranasal sinuses." [url:http\://www.cancer.gov/cancertopics/pdq/treatment/paranasalsinus/Patient/page1]
! synonym: "adenocarcinoma of Accessory sinus" E
\ No newline at end of file

Index: worm_phenotype.obo
===================================================================
RCS file: /cvsroot/obo/obo/ontology/phenotype/worm_phenotype.obo,v
retrieving revision 1.220
retrieving revision 1.221
diff -C2 -d -r1.220 -r1.221
*** worm_phenotype.obo	27 May 2013 08:56:14 -0000	1.220
--- worm_phenotype.obo	28 May 2013 08:54:48 -0000	1.221
***************
*** 1,4 ****
  format-version: 1.2
! date: 26:05:2013 18:57
  saved-by: garys
  auto-generated-by: OBO-Edit 1.002
--- 1,4 ----
  format-version: 1.2
! date: 27:05:2013 16:10
  saved-by: garys
  auto-generated-by: OBO-Edit 1.002
***************
*** 16807,16810 ****
--- 16807,16899 ----
  
  [Term]
+ id: WBPhenotype:0002124
+ name: circumferential actin bundles disorganized
+ def: "The distribution or presence of actin in circumferential actin bundles (CFB) differs from that observed in control animals. Contraction of CFBs provide the driving force for epidermal elongation." [WB:WBPaper00006290, WB:WBPerson712]
+ is_a: WBPhenotype:0001587 ! actin organization biogenesis variant
+ 
+ 
+ [Term]
+ id: WBPhenotype:0002125
+ name: growth inhibition response to chemical
+ def: "Animals do not grow fast or the quality of growth is decreased when exposed to a specific chemical compound when compared to control animals." [WB:WBPaper00040519, WB:WBPerson712]
+ is_a: WBPhenotype:0000523 ! chemical response variant
+ 
+ 
+ [Term]
+ id: WBPhenotype:0002126
+ name: intestinal fluorescence decreased
+ def: "Animals exhibit a decrease in the accumulation or expression of biochromes or any other substances that fluoresce in the intestine." [WB:WBPerson712]
+ is_a: WBPhenotype:0000293 ! alimentary system pigmentation variant
+ 
+ 
+ [Term]
+ id: WBPhenotype:0002127
+ name: intraflagellar transport velocity variant
+ def: "Animals exhibit variation rate of directed movement of organelles or molecules along microtubules in nerve cell axons, compared to control." [WB:WBPaper00038442, WB:WBPerson712]
+ is_a: WBPhenotype:0000853 ! intraflagellar transport variant
+ 
+ 
+ [Term]
+ id: WBPhenotype:0002128
+ name: leaving assay defective
+ def: "Males remain on food in the absence of mates, a defect in male mate-searching behavior observed in control males. " [WB:WBPaper00041718, WB:WBPerson712]
+ synonym: "Las" BROAD []
+ is_a: WBPhenotype:0001983 ! lawn leaving behavior variant
+ is_a: WBPhenotype:0004031 ! mate searching variant
+ 
+ 
+ [Term]
+ id: WBPhenotype:0002129
+ name: mitochondrial DNA copy number variant
+ def: "Relative levels of mtDNA differ from that observed for control animals." [WB:WBPaper00032112, WB:WBPerson712]
+ is_a: WBPhenotype:0000732 ! DNA metabolism variant
+ is_a: WBPhenotype:0001282 ! mitochondrial metabolism variant
+ 
+ 
+ [Term]
+ id: WBPhenotype:0002130
+ name: post mating variant
+ def: "Males exhibit variations of the behaviors observed in control animals that follow the completion of mating." [WB:WBPaper00041718, WB:WBPerson712]
+ synonym: "mate experience variant" RELATED []
+ is_a: WBPhenotype:0000648 ! male mating variant
+ 
+ 
+ [Term]
+ id: WBPhenotype:0002131
+ name: muscle cell ultrastructure variant
+ def: "Animals display variations in the structure or organization of the components of the muscle, compared to that observed in control animals." [WB:WBPerson712]
+ is_a: WBPhenotype:0000904 ! muscle cell morphology variant
+ 
+ 
+ [Term]
+ id: WBPhenotype:0002132
+ name: protein complex organization variant
+ def: "The formation, organization, or stability of a protein complex is altered in comparison to corresponding complexes in control animals." [WB:WBPaper00038066, WB:WBPerson712]
+ synonym: "protein clustering variant " RELATED []
+ is_a: WBPhenotype:0001370 ! protein protein interaction variant
+ 
+ 
+ [Term]
+ id: WBPhenotype:0002133
+ name: ooplasmic streaming slow
+ def: "The bulk flow of cytoplasm in the egg, that facilitates mixing of ooplasm, occurs at a reduced rate compared to that measured for controls." [WB:WBPerson712]
+ is_a: WBPhenotype:0000360 ! cytoplasmic streaming defective
+ 
+ 
+ [Term]
+ id: WBPhenotype:0002134
+ name: predator escape defective
+ def: "Animals are less successful than controls in evading predators during predator-prey interactions." [WB:WBPaper00039982, WB:WBPerson712]
+ is_a: WBPhenotype:0002135 ! organism predator response variant
+ 
+ 
+ [Term]
+ id: WBPhenotype:0002135
+ name: organism predator response variant
+ def: "Predator-prey interactions differ from that observed in control interactions. " [WB:WBPaper00039982, WB:WBPerson712]
+ is_a: WBPhenotype:0000738 ! organism environmental stimulus response variant
+ 
+ 
+ [Term]
  id: WBPhenotype:0004001
  name: hermaphrodite mating variant