From: <cmu...@us...> - 2011-08-30 20:07:34
|
Revision: 4005 http://obo.svn.sourceforge.net/obo/?rev=4005&view=rev Author: cmungall Date: 2011-08-30 20:07:23 +0000 (Tue, 30 Aug 2011) Log Message: ----------- Added Paths: ----------- ontologies/trunk/UBERON/composite-vertebrate.owl Added: ontologies/trunk/UBERON/composite-vertebrate.owl =================================================================== --- ontologies/trunk/UBERON/composite-vertebrate.owl (rev 0) +++ ontologies/trunk/UBERON/composite-vertebrate.owl 2011-08-30 20:07:23 UTC (rev 4005) @@ -0,0 +1,457483 @@ +<?xml version="1.0"?> +<rdf:RDF xmlns="http://purl.obolibrary.org/obo/uberon.owl#" + xml:base="http://purl.obolibrary.org/obo/uberon.owl" + xmlns:obo="http://purl.obolibrary.org/obo/" + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" + xmlns:owl="http://www.w3.org/2002/07/owl#" + xmlns:xsd="http://www.w3.org/2001/XMLSchema#" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:uberon="http://purl.obolibrary.org/obo/uberon#" + xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> + <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon.owl"> + <oboInOwl:hasOBOFormatVersion rdf:datatype="http://www.w3.org/2001/XMLSchema#string">1.2</oboInOwl:hasOBOFormatVersion> + <oboInOwl:treat-xrefs-as-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO part_of NCBITaxon:8292</oboInOwl:treat-xrefs-as-genus-differentia> + <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO part_of NCBITaxon:8292</oboInOwl:treat-xrefs-as-reverse-genus-differentia> + <oboInOwl:treat-xrefs-as-equivalent rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BILA</oboInOwl:treat-xrefs-as-equivalent> + <oboInOwl:treat-xrefs-as-equivalent rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BSPO</oboInOwl:treat-xrefs-as-equivalent> + <oboInOwl:treat-xrefs-as-equivalent rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CARO</oboInOwl:treat-xrefs-as-equivalent> + <oboInOwl:treat-xrefs-as-has-subclass rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EHDAA</oboInOwl:treat-xrefs-as-has-subclass> + <oboInOwl:treat-xrefs-as-has-subclass rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EHDAA2</oboInOwl:treat-xrefs-as-has-subclass> + <oboInOwl:treat-xrefs-as-has-subclass rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EMAPA</oboInOwl:treat-xrefs-as-has-subclass> + <oboInOwl:treat-xrefs-as-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBbt part_of NCBITaxon:7227</oboInOwl:treat-xrefs-as-genus-differentia> + <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBbt part_of NCBITaxon:7227</oboInOwl:treat-xrefs-as-reverse-genus-differentia> + <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA part_of NCBITaxon:9606</oboInOwl:treat-xrefs-as-reverse-genus-differentia> + <oboInOwl:treat-xrefs-as-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA part_of NCBITaxon:9606</oboInOwl:treat-xrefs-as-genus-differentia> + <oboInOwl:treat-xrefs-as-equivalent rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO</oboInOwl:treat-xrefs-as-equivalent> + <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">HAO part_of NCBITaxon:7399</oboInOwl:treat-xrefs-as-reverse-genus-differentia> + <oboInOwl:treat-xrefs-as-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">HAO part_of NCBITaxon:7399</oboInOwl:treat-xrefs-as-genus-differentia> + <oboInOwl:treat-xrefs-as-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">KUPO part_of NCBITaxon:9606</oboInOwl:treat-xrefs-as-genus-differentia> + <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MA part_of NCBITaxon:10088</oboInOwl:treat-xrefs-as-reverse-genus-differentia> + <oboInOwl:treat-xrefs-as-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MA part_of NCBITaxon:10088</oboInOwl:treat-xrefs-as-genus-differentia> + <oboInOwl:treat-xrefs-as-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MFO part_of NCBITaxon:8089</oboInOwl:treat-xrefs-as-genus-differentia> + <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MFO part_of NCBITaxon:8089</oboInOwl:treat-xrefs-as-reverse-genus-differentia> + <oboInOwl:treat-xrefs-as-equivalent rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NIF_GrossAnatomy</oboInOwl:treat-xrefs-as-equivalent> + <oboInOwl:treat-xrefs-as-equivalent rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OG</oboInOwl:treat-xrefs-as-equivalent> + <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">SPD part_of NCBITaxon:6893</oboInOwl:treat-xrefs-as-reverse-genus-differentia> + <oboInOwl:treat-xrefs-as-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">SPD part_of NCBITaxon:6893</oboInOwl:treat-xrefs-as-genus-differentia> + <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TADS part_of NCBITaxon:6939</oboInOwl:treat-xrefs-as-reverse-genus-differentia> + <oboInOwl:treat-xrefs-as-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TADS part_of NCBITaxon:6939</oboInOwl:treat-xrefs-as-genus-differentia> + <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TAO part_of NCBITaxon:32443</oboInOwl:treat-xrefs-as-reverse-genus-differentia> + <oboInOwl:treat-xrefs-as-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TAO part_of NCBITaxon:32443</oboInOwl:treat-xrefs-as-genus-differentia> + <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TGMA part_of NCBITaxon:44484</oboInOwl:treat-xrefs-as-reverse-genus-differentia> + <oboInOwl:treat-xrefs-as-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TGMA part_of NCBITaxon:44484</oboInOwl:treat-xrefs-as-genus-differentia> + <oboInOwl:treat-xrefs-as-equivalent rdf:datatype="http://www.w3.org/2001/XMLSchema#string">VAO</oboInOwl:treat-xrefs-as-equivalent> + <oboInOwl:treat-xrefs-as-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">WBbt part_of NCBITaxon:6237</oboInOwl:treat-xrefs-as-genus-differentia> + <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">WBbt part_of NCBITaxon:6237</oboInOwl:treat-xrefs-as-reverse-genus-differentia> + <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">XAO part_of NCBITaxon:8353</oboInOwl:treat-xrefs-as-reverse-genus-differentia> + <oboInOwl:treat-xrefs-as-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">XAO part_of NCBITaxon:8353</oboInOwl:treat-xrefs-as-genus-differentia> + <oboInOwl:treat-xrefs-as-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA part_of NCBITaxon:7954</oboInOwl:treat-xrefs-as-genus-differentia> + <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA part_of NCBITaxon:7954</oboInOwl:treat-xrefs-as-reverse-genus-differentia> + <oboInOwl:treat-xrefs-as-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncithesaurus part_of NCBITaxon:40674</oboInOwl:treat-xrefs-as-genus-differentia> + <oboInOwl:treat-xrefs-as-reverse-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ncithesaurus part_of NCBITaxon:40674</oboInOwl:treat-xrefs-as-reverse-genus-differentia> + </owl:Ontology> + + + + <!-- + /////////////////////////////////////////////////////////////////////////////////////// + // + // Annotation properties + // + /////////////////////////////////////////////////////////////////////////////////////// + --> + + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#vertebrate_core"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#emapa_ehdaa2"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">derived from the union of EHDAA2 and EMAPA - still to be checked</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#developmental_classification"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">developmental_classification</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasScope"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_scope</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#systematic_synonym"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Systematic synonym</rdfs:label> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/> + <oboInOwl:hasScope rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#SENSU"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">taxonomic disambiguation</rdfs:label> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#goslim_yeast"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Yeast GO slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#spatially_disjoint_from"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">spatially_disjoint_from</rdfs:label> + <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A is spatially_disjoint_from B if they have no parts in common.</obo:IAO_0000115> + <obo:IAO_0000424 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO_0000051 exactly 0 (BFO_0000050 some ?Y)</obo:IAO_0000424> + <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">non_overlapping_with</oboInOwl:hasExactSynonym> + <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">shares_no_parts_with</oboInOwl:hasExactSynonym> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">spatially_disjoint_from</oboInOwl:id> + <oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag> + <oboInOwl:is_class_level rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_class_level> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> + </owl:AnnotationProperty> + <owl:Axiom> + <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A is spatially_disjoint_from B if they have no parts in common.</owl:annotatedTarget> + <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">SO:cjm</oboInOwl:hasDbXref> + <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/> + <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/uberon#spatially_disjoint_from"/> + </owl:Axiom> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">term replaced by</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#cell_quality"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cell_quality</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#unvetted"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">unvetted</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasSynonymType"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_synonym_type</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#goslim_pir"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PIR GO slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">database_cross_reference</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#metazoa_core"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">core classes typically found across metazoa. one purpose is to create a rough set of terms that could be used to start a new metazoan AO. Note this subset is not yet fully fleshed out</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#FORMULA"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FORMULA</rdfs:label> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#InChI"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">InChI</rdfs:label> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#relational_slim"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Relational slim: types of quality that require an additional entity in order to exist</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_obo_namespace</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#anatomical_site_slim"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Anatomical Site slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#defined_by_ordinal_series"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">classes that are defined by relative position counting from first in a series in an individual organism rather than by homology</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#DUBIOUS"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">dubious or contested synonym</rdfs:label> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">subset_property</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#scalar_slim"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Scalar slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#disjointness_axiom_removed"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A class which has a weakened disjointness axiom, to avoid inconsistency. These are kept separately in the uberon_disjoint_from_strict ontology.</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#is_class_level"/> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#goslim_goa"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOA and proteome slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">synonym_type_property</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#IUPAC_NAME"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">IUPAC NAME</rdfs:label> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#treat-xrefs-as-has-subclass"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">treat-xrefs-as-has-subclass</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_exact_synonym</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#BRAND_NAME"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BRAND NAME</rdfs:label> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#comment"/> + <owl:AnnotationProperty rdf:about="http://www.w3.org/2002/07/owl#deprecated"/> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#inherited_grouping_class"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A grouping class that originates in two or more separate anatomical ontologies. Includes 'region of X' type terms</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#grouping_class"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Subset consisting of classes creating for grouping purposes</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#absent_slim"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Absent/present slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#homologous_to"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">homologous_to</rdfs:label> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">homologous_to</oboInOwl:id> + <oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#SMILES"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">SMILES</rdfs:label> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#is_metadata_tag"/> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#INCONSISTENT"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">indicates that a synonym is used in an inconsistent or confusing way, typically between species</rdfs:label> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#treat-xrefs-as-reverse-genus-differentia"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">treat-xrefs-as-reverse-genus-differentia</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#sectional_anatomy_items"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Sectional Anatomy Item slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#treat-xrefs-as-genus-differentia"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">treat-xrefs-as-genus-differentia</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_narrow_synonym</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#consider"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">consider</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_broad_synonym</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#upper_level"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">abstract upper-level terms not directly useful for analysis</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#frequent_anatomy_items"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Frequently Used Anatomy slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#PLURAL"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PLURAL</rdfs:label> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Plural</rdfs:label> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">plural term</rdfs:label> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#shorthand"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">shorthand</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#goslim_candida"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Candida GO slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_obo_format_version</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_subset</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#high_level_annotation_qc"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">High-level terms not to be used for direct annotation</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">definition</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000424"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">expand expression to</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#upper_ontology_conflict"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Terms in this subset group together terms from different anatomy ontologies that have conflicting upper ontology/CARO assignments. For example, in FMA the naris is immaterial and in ZFA it is an organism subdivision.</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#transitive_over"/> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasAlternativeId"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_alternative_id</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#disposition_slim"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Disposition slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#goslim_generic"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Generic GO slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#functional_classification"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">functional_classification</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#early_development"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes.</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#inconsistent_with_fma"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">classes that have some inconsistency with FMA</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#uberon_slim"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Uberon slim</rdfs:comment> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Uberon slim - somewhat arbitrary subset that excludes obscure terms and deep compositional terms</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#abnormal_slim"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Abnormal/normal slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#attribute_slim"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Attribute slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#value_slim"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Value slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#gosubset_prok"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Prokaryotic GO subset</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#label"/> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#ATTRIBUTION_REQUIRED"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">expert consultation and attribution required</rdfs:label> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#treat-xrefs-as-equivalent"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">treat-xrefs-as-equivalent</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#INN"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">INN</rdfs:label> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#major_organ"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_related_synonym</rdfs:label> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#goslim_plant"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Plant GO slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#cell_slim"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cell_slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#HOMOLOGY"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">a synonym made on the basis of a possibly homologous structure in another species</rdfs:label> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#dubious_for_taxon"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">dubious_for_taxon</rdfs:label> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">dubious_for_taxon</oboInOwl:id> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">this relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take time to resolve. Example: metencephalon in teleost</rdfs:comment> + <oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag> + <oboInOwl:is_class_level rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_class_level> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#InChIKey"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">InChIKey</rdfs:label> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#organism_views"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Organism View slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#goslim_pombe"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Fission yeast GO slim</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#has_fused_element"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_fused_element</rdfs:label> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A single bone in one species may correspond to the fusion of two or more bones found as distinct elements in another. For example, tibiofibula has_fused_element tibia. A has_fused_element B does not imply that A has_part some B, rather than A has_part some B', where B' is not a subtype of B (because B is a distinct element but B' is a regional part) but has some evolutionary relationship to B.</rdfs:comment> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_fused_element</oboInOwl:id> + <oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag> + <oboInOwl:is_class_level rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_class_level> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> + </owl:AnnotationProperty> + <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/uberon#dubious_grouping"> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Indicates that subclasses in AOs may be inappropriately linked</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/> + </owl:AnnotationProperty> + + + + <!-- + /////////////////////////////////////////////////////////////////////////////////////// + // + // Object Properties + // + /////////////////////////////////////////////////////////////////////////////////////// + --> + + + + + <!-- http://purl.obolibrary.org/obo/BFO_0000050 --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"> + <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part of</rdfs:label> + <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000050</oboInOwl:hasDbXref> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">note that all the uses of part_of in this ontology are for proper part of</rdfs:comment> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:id> + <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:shorthand> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">zebrafish_anatomical_ontology</oboInOwl:hasOBONamespace> + </owl:ObjectProperty> + + + + <!-- http://purl.obolibrary.org/obo/BFO_0000051 --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051"> + <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has part</rdfs:label> + <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000051</oboInOwl:hasDbXref> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_part</oboInOwl:id> + <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_part</oboInOwl:shorthand> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> + <owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/> + </owl:ObjectProperty> + + + + <!-- http://purl.obolibrary.org/obo/BFO_0000053 --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000053"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">bearer of</rdfs:label> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO</oboInOwl:hasOBONamespace> + <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000053</oboInOwl:hasDbXref> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">bearer_of</oboInOwl:id> + <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">bearer_of</oboInOwl:shorthand> + </owl:ObjectProperty> + + + + <!-- http://purl.obolibrary.org/obo/BFO_0000054 --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000054"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">realized by</rdfs:label> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO</oboInOwl:hasOBONamespace> + <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000054</oboInOwl:hasDbXref> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">realized_by</oboInOwl:id> + <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">realized_by</oboInOwl:shorthand> + </owl:ObjectProperty> + + + + <!-- http://purl.obolibrary.org/obo/BFO_0000056 --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000056"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">participates in</rdfs:label> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO</oboInOwl:hasOBONamespace> + <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000056</oboInOwl:hasDbXref> + <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">participates_in</oboInOwl:shorthand> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">participates_in</oboInOwl:id> + </owl:ObjectProperty> + + + + <!-- http://purl.obolibrary.org/obo/BFO_0000068 --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000068"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">existence_starts_during</rdfs:label> + <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000068</oboInOwl:hasDbXref> + <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s.</obo:IAO_0000115> + <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">begins_to_exist_during</oboInOwl:hasExactSynonym> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">existence_starts_during</oboInOwl:id> + <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">existence_starts_during</oboInOwl:shorthand> + <oboInOwl:transitive_over rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:transitive_over> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> + <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/uberon#existence_starts_or_ends_during"/> + </owl:ObjectProperty> + <owl:Axiom> + <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s.</owl:annotatedTarget> + <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:cjm</oboInOwl:hasDbXref> + <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000068"/> + <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/> + </owl:Axiom> + + + + <!-- http://purl.obolibrary.org/obo/BFO_0000069 --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000069"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">existence_ends_during</rdfs:label> + <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">BFO:0000069</oboInOwl:hasDbXref> + <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely.</obo:IAO_0000115> + <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ceases_to_exist_during</oboInOwl:hasExactSynonym> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">existence_ends_during</oboInOwl:id> + <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">existence_ends_during</oboInOwl:shorthand> + <oboInOwl:transitive_over rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:transitive_over> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">todo - add full axioms to bfo</rdfs:comment> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> + <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/uberon#existence_starts_or_ends_during"/> + </owl:ObjectProperty> + <owl:Axiom> + <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely.</owl:annotatedTarget> + <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:cjm</oboInOwl:hasDbXref> + <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BFO_0000069"/> + <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/> + </owl:Axiom> + + + + <!-- http://purl.obolibrary.org/obo/RO_0002131 --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002131"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">overlaps</rdfs:label> + <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A overlaps B if they share some part in common.</obo:IAO_0000115> + <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">RO:0002131</oboInOwl:hasDbXref> + <obo:IAO_0000424 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)</obo:IAO_0000424> + <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">overlaps</oboInOwl:shorthand> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">overlaps</oboInOwl:id> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> + </owl:ObjectProperty> + + + + <!-- http://purl.obolibrary.org/obo/RO_0002202 --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002202"> + <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">develops from</rdfs:label> + <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">RO:0002202</oboInOwl:hasDbXref> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">develops_from</oboInOwl:id> + <oboInOwl:shorthand rdf:datatype="http://www.w3.org/2001/XMLSchema#string">develops_from</oboInOwl:shorthand> + <oboInOwl:transitive_over rdf:datatype="http://www.w3.org/2001/XMLSchema#string">part_of</oboInOwl:transitive_over> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">zebrafish_anatomical_ontology</oboInOwl:hasOBONamespace> + <owl:propertyChainAxiom rdf:parseType="Collection"> + <rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/> + <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002202"/> + </owl:propertyChainAxiom> + </owl:ObjectProperty> + + + + <!-- http://purl.obolibrary.org/obo/uberon#adjacent_to --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/uberon#adjacent_to"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">adjacent_to</rdfs:label> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">adjacent_to</oboInOwl:id> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> + </owl:ObjectProperty> + + + + <!-- http://purl.obolibrary.org/obo/uberon#anterior_to --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/uberon#anterior_to"> + <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterior_to</rdfs:label> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">anterior_to</oboInOwl:id> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> + </owl:ObjectProperty> + + + + <!-- http://purl.obolibrary.org/obo/uberon#attached_to --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/uberon#attached_to"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">attached_to</rdfs:label> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:85882</rdfs:comment> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">attached_to</oboInOwl:id> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">human_developmental_anatomy.ontology</oboInOwl:hasOBONamespace> + </owl:ObjectProperty> + + + + <!-- http://purl.obolibrary.org/obo/uberon#bounds --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/uberon#bounds"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">bounds</rdfs:label> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">bounds</oboInOwl:id> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> + </owl:ObjectProperty> + + + + <!-- http://purl.obolibrary.org/obo/uberon#branch_of --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/uberon#branch_of"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">branch_of</rdfs:label> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">branch_of</oboInOwl:id> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">human_developmental_anatomy.ontology</oboInOwl:hasOBONamespace> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">we need to check if FMA branch_of implies part_of. the relation we intend to use here should - for example, see vestibulocochlear nerve</rdfs:comment> + <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/> + </owl:ObjectProperty> + + + + <!-- http://purl.obolibrary.org/obo/uberon#capable_of --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/uberon#capable_of"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">capable_of</rdfs:label> + <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A relation between a material entity (such as a cell) and a process. This is a shortcut relation, translation rule for which is: capable_of P <-> bearer_of (some realized_by only P). Example: osteoclast capable of bone resorption.</obo:IAO_0000115> + <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">At the CL meeting we discussed a separate case, capable_of P <-> bearer_of (some realized_by only (P or part_of some P)). We need to look at specific cases.</rdfs:comment> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL</oboInOwl:hasOBONamespace> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">capable_of</oboInOwl:id> + <obo:IAO_0000424 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://purl.obolibrary.org/obo/BFO_0000053 some (http://purl.obolibrary.org/obo/BFO_0000054 only ?Y)</obo:IAO_0000424> + </owl:ObjectProperty> + <owl:Axiom> + <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A relation between a material entity (such as a cell) and a process. This is a shortcut relation, translation rule for which is: capable_of P <-> bearer_of (some realized_by only P). Example: osteoclast capable of bone resorption.</owl:annotatedTarget> + <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:cjm</oboInOwl:hasDbXref> + <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/> + <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/uberon#capable_of"/> + </owl:Axiom> + + + + <!-- http://purl.obolibrary.org/obo/uberon#capable_of_part_of --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/uberon#capable_of_part_of"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">capable_of_part_of</rdfs:label> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">capable_of_part_of</oboInOwl:id> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> + <owl:propertyChainAxiom rdf:parseType="Collection"> + <rdf:Description rdf:about="http://purl.obolibrary.org/obo/uberon#capable_of"/> + <rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/> + </owl:propertyChainAxiom> + </owl:ObjectProperty> + + + + <!-- http://purl.obolibrary.org/obo/uberon#capable_of_regulation_of --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/uberon#capable_of_regulation_of"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">capable_of_regulation_of</rdfs:label> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">capable_of_regulation_of</oboInOwl:id> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> + <owl:propertyChainAxiom rdf:parseType="Collection"> + <rdf:Description rdf:about="http://purl.obolibrary.org/obo/uberon#capable_of"/> + <rdf:Description rdf:about="http://purl.obolibrary.org/obo/uberon#regulates"/> + </owl:propertyChainAxiom> + </owl:ObjectProperty> + + + + <!-- http://purl.obolibrary.org/obo/uberon#coincides_with --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/uberon#coincides_with"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">coincides_with</rdfs:label> + <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Relation between occurrents, shares start and end boundaries.</obo:IAO_0000115> + <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">coincides_with</oboInOwl:hasExactSynonym> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">coincides_with</oboInOwl:id> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> + <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/uberon#finishes"/> + <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/uberon#starts"/> + </owl:ObjectProperty> + <owl:Axiom> + <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Allen:starts</oboInOwl:hasDbXref> + <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Relation between occurrents, shares start and end boundaries.</owl:annotatedTarget> + <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UBERON:cjm</oboInOwl:hasDbXref> + <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/> + <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/uberon#coincides_with"/> + </owl:Axiom> + + + + <!-- http://purl.obolibrary.org/obo/uberon#connects --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/uberon#connects"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">connects</rdfs:label> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">connects</oboInOwl:id> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> + </owl:ObjectProperty> + + + + <!-- http://purl.obolibrary.org/obo/uberon#contains --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/uberon#contains"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">contains</rdfs:label> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">contains</oboInOwl:id> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> + </owl:ObjectProperty> + + + + <!-- http://purl.obolibrary.org/obo/uberon#continuous_with --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/uberon#continuous_with"> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">continuous_with</rdfs:label> + <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FMA:85972</oboInOwl:hasDbXref> + <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">continuous_with</oboInOwl:id> + <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">uberon</oboInOwl:hasOBONamespace> + </owl:ObjectProperty> + + + + <!-- http://purl.obolibrary.org/obo/uberon#deep_to --> + + <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/uberon#deep_to"> + <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/> + <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">deep_to<... [truncated message content] |