From: Seth C. <sjc...@us...> - 2010-10-19 07:01:59
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Update of /cvsroot/obo/obo/ontology/phenotype In directory sfp-cvsdas-4.v30.ch3.sourceforge.com:/tmp/cvs-serv15487/phenotype Modified Files: human_disease.obo mosquito_insecticide_resistance.obo worm_phenotype.obo Log Message: Automated file update Index: human_disease.obo =================================================================== RCS file: /cvsroot/obo/obo/ontology/phenotype/human_disease.obo,v retrieving revision 1.288 retrieving revision 1.289 diff -C2 -d -r1.288 -r1.289 *** human_disease.obo 16 Oct 2010 07:01:48 -0000 1.288 --- human_disease.obo 19 Oct 2010 07:01:46 -0000 1.289 *************** *** 1,4 **** format-version: 1.2 ! date: 15:10:2010 16:44 auto-generated-by: OBO-Edit 2.1-beta4 subsetdef: gram-negative_bacterial_infectious_disease "gram-negative bacterial infectious disease" --- 1,4 ---- format-version: 1.2 ! date: 18:10:2010 17:10 auto-generated-by: OBO-Edit 2.1-beta4 subsetdef: gram-negative_bacterial_infectious_disease "gram-negative bacterial infectious disease" *************** [...1413 lines suppressed...] *** 155692,155696 **** xref: SNOMEDCT_2010_1_31:7530009 xref: UMLS_CUI:C0013338 ! is_a: DOID:2448 ! endocrine bone disease is_a: DOID:9406 ! hypopituitarism --- 155675,155679 ---- xref: SNOMEDCT_2010_1_31:7530009 xref: UMLS_CUI:C0013338 ! is_a: DOID:0080001 ! bone disease is_a: DOID:9406 ! hypopituitarism *************** *** 157106,157110 **** is_a: DOID:0050177 ! simple genetic disease is_a: DOID:2445 ! pituitary disease - is_a: DOID:2448 ! endocrine bone disease [Term] --- 157089,157092 ---- Index: worm_phenotype.obo =================================================================== RCS file: /cvsroot/obo/obo/ontology/phenotype/worm_phenotype.obo,v retrieving revision 1.154 retrieving revision 1.155 diff -C2 -d -r1.154 -r1.155 *** worm_phenotype.obo 8 Oct 2010 07:02:05 -0000 1.154 --- worm_phenotype.obo 19 Oct 2010 07:01:50 -0000 1.155 *************** *** 1,4 **** format-version: 1.2 ! date: 07:10:2010 16:26 saved-by: garys auto-generated-by: OBO-Edit 1.002 --- 1,4 ---- format-version: 1.2 ! date: 18:10:2010 15:24 saved-by: garys auto-generated-by: OBO-Edit 1.002 *************** *** 247,250 **** --- 247,252 ---- synonym: "Gro" BROAD three_letter_name [] is_a: WBPhenotype:0000030 ! growth variant + is_a: WBPhenotype:0000043 ! general pace of development variant + is_a: WBPhenotype:0000438 ! retarded heterochronic variations *************** *** 351,354 **** --- 353,357 ---- def: "The progression through stages between fertilization to hatching are temporally retarded." [WB:WBPerson712] synonym: "Sle" BROAD three_letter_name [] + is_a: WBPhenotype:0000674 ! slow development is_a: WBPhenotype:0000749 ! embryonic development variant *************** *** 360,365 **** subset: phenotype_slim_wb synonym: "general pace of development abnormal" NARROW [] ! is_a: WBPhenotype:0000531 ! organism development variant ! is_a: WBPhenotype:0000576 ! organism physiology variant --- 363,367 ---- subset: phenotype_slim_wb synonym: "general pace of development abnormal" NARROW [] ! is_a: WBPhenotype:0000033 ! developmental timing variant *************** *** 379,382 **** --- 381,385 ---- def: "The developmental progression of an animal after the embryonic stage, over time, from its formation to its mature structure is delayed compared to control." [WB:cab, WB:WBPaper00025054] is_a: WBPhenotype:0000049 ! postembryonic development variant + is_a: WBPhenotype:0000848 ! developmental delay *************** *** 1058,1062 **** synonym: "general pace of development abnormal" NARROW [] is_a: WBPhenotype:0000043 ! general pace of development variant - is_a: WBPhenotype:0001186 ! embryo delayed at pronuclear contact early emb --- 1061,1064 ---- *************** *** 2163,2166 **** --- 2165,2169 ---- def: "Any variation that causes a delay in the stereotypical cleavage event compared to control." [WB:WBPerson2021, WB:WBPerson557] is_a: WBPhenotype:0000266 ! cell cleavage variant + is_a: WBPhenotype:0000438 ! retarded heterochronic variations *************** *** 2323,2326 **** --- 2326,2330 ---- name: sperm absent def: "Animals lack fully specialized male gametes that are competent for fertilization." [WB:WBPerson2021] + synonym: "no sperm" RELATED [] is_a: WBPhenotype:0000395 ! no differentiated gametes *************** *** 2330,2333 **** --- 2334,2338 ---- name: no oocytes def: "Hermaphrodites lack fully specialized female gametes that are competent for fertilization." [WB:WBPerson2021] + synonym: "oocytes absent" RELATED [] is_a: WBPhenotype:0000395 ! no differentiated gametes *************** *** 2537,2540 **** --- 2542,2546 ---- name: cell cycle delayed def: "Cells of the animals proceed through their replicative phase at a pace slower than observed for control cells." [WB:WBPerson712] + is_a: WBPhenotype:0000438 ! retarded heterochronic variations is_a: WBPhenotype:0000740 ! cell cycle variant *************** *** 2800,2803 **** --- 2806,2810 ---- def: "Specialization of HSN precursor cells to mature HSN neurons occurs at an earlier stage of development compared to control." [WB:WBPerson2021] is_a: WBPhenotype:0000354 ! cell differentiation variant + is_a: WBPhenotype:0000439 ! precocious heterochronic variations *************** *** 2806,2809 **** --- 2813,2817 ---- name: spermatogenesis delayed def: "The progression of immature germ cells to functional sperm is retarded compared to control." [WB:WBPaper00005566, WB:WBPerson2021] + is_a: WBPhenotype:0000438 ! retarded heterochronic variations is_a: WBPhenotype:0000670 ! spermatogenesis variant *************** *** 2861,2864 **** --- 2869,2873 ---- name: cell division slow def: "Any variation that delays the physical partitioning and separation of a cell into daughter cells compared to control." [WB:WBPerson2021, WB:WBPerson557] + is_a: WBPhenotype:0000438 ! retarded heterochronic variations is_a: WBPhenotype:0000746 ! cell division variant *************** *** 3171,3174 **** --- 3180,3184 ---- def: "The emergence of larvae from their protective egg shells is retarded compared to control animals." [GO:0035188, WB:WBPerson2021] is_a: WBPhenotype:0000048 ! hatching variant + is_a: WBPhenotype:0000438 ! retarded heterochronic variations *************** *** 3439,3442 **** --- 3449,3453 ---- name: larval development retarded def: "The developmental progression of a larva over time, from its formation to its mature structure is delayed compared to control. The larva is the early, immature form of an animal between hatching and adulthood." [WB:WBPerson2021, WB:WBPerson557] + is_a: WBPhenotype:0000438 ! retarded heterochronic variations is_a: WBPhenotype:0000750 ! larval development variant *************** *** 4241,4244 **** --- 4252,4256 ---- def: "Eggs are laid at an earlier stage of development when compared with control animals." [WB:cab] is_a: WBPhenotype:0000005 ! hyperactive egg laying + is_a: WBPhenotype:0000439 ! precocious heterochronic variations *************** *** 5333,5337 **** def: "The developmental progression of an animal, from its formation to its mature structure occurs over a longer time period compared to control." [WB:WBPerson2021, WB:WBPerson557] synonym: "retarded development" RELATED [] ! is_a: WBPhenotype:0000043 ! general pace of development variant --- 5345,5349 ---- def: "The developmental progression of an animal, from its formation to its mature structure occurs over a longer time period compared to control." [WB:WBPerson2021, WB:WBPerson557] synonym: "retarded development" RELATED [] ! is_a: WBPhenotype:0000438 ! retarded heterochronic variations *************** *** 5422,5425 **** --- 5434,5438 ---- name: larval growth slow def: "Any variation that causes a reduction in growth rate during larval stages compared to control." [WB:WBPerson2021, WB:WBPerson557] + is_a: WBPhenotype:0000438 ! retarded heterochronic variations is_a: WBPhenotype:0001016 ! larval growth variant *************** *** 6289,6292 **** --- 6302,6306 ---- def: "Animals have decreased accumulation or expression of biochromes or any other substances that causes increased translucency of the posterior body axis compared to control." [WB:WBPerson557] is_a: WBPhenotype:0000984 ! posterior pigmentation variant + is_a: WBPhenotype:0001261 ! pale *************** *** 6296,6299 **** --- 6310,6314 ---- def: "Animals have decreased accumulation or expression of biochromes or any other substances that causes increased translucency of the anterior body axis compared to control." [WB:WBPerson557] is_a: WBPhenotype:0000971 ! anterior pigmentation variant + is_a: WBPhenotype:0001261 ! pale *************** *** 6786,6790 **** name: developmental delay def: "The developmental progression of an animal over time, from its formation to its mature structure is delayed compared to control." [WB:WBPerson2021, WB:WBPerson557] ! is_a: WBPhenotype:0000043 ! general pace of development variant --- 6801,6805 ---- name: developmental delay def: "The developmental progression of an animal over time, from its formation to its mature structure is delayed compared to control." [WB:WBPerson2021, WB:WBPerson557] ! is_a: WBPhenotype:0000438 ! retarded heterochronic variations *************** *** 8892,8895 **** --- 8907,8911 ---- def: "P0 spindle rotates late in the inviable one- to four-cell embryo." [WB:cab, WB:cgc5599] synonym: "Emb" BROAD three_letter_name [] + is_a: WBPhenotype:0000438 ! retarded heterochronic variations is_a: WBPhenotype:0001107 ! spindle rotation defective early emb *************** *** 8981,8984 **** --- 8997,9001 ---- def: "Embryos take longer to divide during the first and second cell divisions." [WB:cab, WB:cgc5599] synonym: "Emb" BROAD three_letter_name [] + is_a: WBPhenotype:0000438 ! retarded heterochronic variations is_a: WBPhenotype:0001116 ! absolute cell cycle timing defective early emb *************** *** 9543,9546 **** --- 9560,9564 ---- def: "The developmental progression of an early embryo over time, from its formation to its mature structure is delayed compared to control." [WB:WBPerson2021, WB:WBPerson557] synonym: "Emb" BROAD three_letter_name [] + is_a: WBPhenotype:0000438 ! retarded heterochronic variations is_a: WBPhenotype:0001100 ! early embryonic lethal *************** *** 11084,11087 **** --- 11102,11106 ---- def: "Relatively unspecialized germ cells prematurely acquire the specialized properties of mature oocytes." [WB:WBPaper00001475, WB:WBPaper00028819, WB:WBPerson2021] is_a: WBPhenotype:0000186 ! oogenesis variant + is_a: WBPhenotype:0000439 ! precocious heterochronic variations *************** *** 11873,11876 **** --- 11892,11896 ---- name: late stage egg laid def: "The eggs being deposited by adults are of a later developmental stage, compared to control. In C. elegans, this is likely to be a consequence of delayed active egg-laying periods." [WB:WBPaper00004310, WB:WBPerson2021] + is_a: WBPhenotype:0000438 ! retarded heterochronic variations is_a: WBPhenotype:0000545 ! egg retention *************** *** 11940,11943 **** --- 11960,11964 ---- def: "VPCs (vulval precursor cells) divide at an earlier stage of development compared to control animals; in C. elegans, VPCs divide in the mid-L3 stage to generate the 22 cells that comprise the vulva." [pmid:16300753, WB:cab] is_a: WBPhenotype:0000345 ! VPC cell division variant + is_a: WBPhenotype:0001495 ! cell division precocious *************** *** 11947,11950 **** --- 11968,11972 ---- def: "DTCs migrate at an earlier stage of development, compared to control." [pmid:16300753, WB:cab] is_a: WBPhenotype:0000195 ! distal tip cell migration variant + is_a: WBPhenotype:0000439 ! precocious heterochronic variations *************** *** 11953,11956 **** --- 11975,11979 ---- name: cell division precocious def: "Cells divide at an earlier stage of development compared to control animals." [WB:cab] + is_a: WBPhenotype:0000439 ! precocious heterochronic variations is_a: WBPhenotype:0000746 ! cell division variant *************** *** 15568,15571 **** --- 15591,15595 ---- def: "Animals exhibit a decreased rate programmed cell death pathway leading to the destruction of the cell, viewable in its terminally dismanteled form of a cell corpse, compared to that observed for control cells." [WB:rk, WB:WBPerson712] is_a: WBPhenotype:0000185 ! apoptosis protracted + is_a: WBPhenotype:0000438 ! retarded heterochronic variations |