[Obo-phenotype-commits] obo/ontology/phenotype quality.obo, 1.46, 1.47

SourceForge Headquarters 225 Broadway Suite 1600 San Diego, CA 92101 +1 (858) 454-5900

Update of /cvsroot/obo/obo/ontology/phenotype
In directory sc8-pr-cvs3.sourceforge.net:/tmp/cvs-serv27216

Modified Files:
	quality.obo 
Log Message:
relational slim added

Index: quality.obo
===================================================================
RCS file: /cvsroot/obo/obo/ontology/phenotype/quality.obo,v
retrieving revision 1.46
retrieving revision 1.47
diff -C2 -d -r1.46 -r1.47
*** quality.obo	7 Mar 2007 11:53:00 -0000	1.46
--- quality.obo	8 Mar 2007 17:52:56 -0000	1.47
***************
*** 1,12 ****
  format-version: 1.0
! date: 07:03:2007 11:52
! saved-by: George Gkoutos
! auto-generated-by: OBO-Edit 1.100-beta18
  subsetdef: abnormal_slim "Abnormal/normal slim"
  subsetdef: absent_slim "Absent/present slim"
  subsetdef: attribute_slim "Attribute slim"
  subsetdef: value_slim "Value slim"
  default-namespace: quality
- namespace-id-rule: * PATO:$sequence(7,0,9999999)$

  [Term]
--- 1,12 ----
  format-version: 1.0
! date: 08:03:2007 17:49
! saved-by: Lou
! auto-generated-by: OBO-Edit 1.100-beta19
  subsetdef: abnormal_slim "Abnormal/normal slim"
  subsetdef: absent_slim "Absent/present slim"
  subsetdef: attribute_slim "Attribute slim"
+ subsetdef: relational_slim "Relational slim"
  subsetdef: value_slim "Value slim"
  default-namespace: quality

  [Term]
***************
*** 246,249 ****
--- 246,250 ----
  def: "The extent of space between two objects or places." [PATOC:GVG]
  subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0001238 ! relational quality of continuant

***************
*** 263,266 ****
--- 264,268 ----
  def: "A relational quality inhering in an object or the molecules of an object, in which the molecules are perceived by a taste and odorant receptors." [PATOC:GVG]
  subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0001238 ! relational quality of continuant

***************
*** 358,361 ****
--- 360,364 ----
  def: "A relational quality inhering in an object by virtue of the molecules being are aerially dispersed and perceived by an odorant receptor." [PATOC:GVG]
  subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0001238 ! relational quality of continuant

***************
*** 460,463 ****
--- 463,467 ----
  def: "A quality inhering in a bearer by virtue of its reaction to a stimulus or an agent." [PATOC:GVG]
  subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0001238 ! relational quality of continuant

***************
*** 508,511 ****
--- 512,516 ----
  def: "A relational quality of continuant inhering in an entity by virtue of its propensity to respond to stimulation." [PATOC:GVG]
  subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0001238 ! relational quality of continuant

***************
*** 1055,1058 ****
--- 1060,1064 ----
  name: consumption
  subset: attribute_slim
+ subset: relational_slim
  related_synonym: "propensity to consume" []
  is_a: PATO:0001240 ! relational quality of occurrent
***************
*** 2049,2052 ****
--- 2055,2059 ----
  name: increased distance
  def: "A distance which is greater relative to the normal or average." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  related_synonym: "long distance" []
***************
*** 2057,2060 ****
--- 2064,2068 ----
  name: decreased distance
  def: "A distance which is lesser relative to the normal or average." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  related_synonym: "short distance" []
***************
*** 2696,2699 ****
--- 2704,2708 ----
  name: responsive
  def: "A quality inhering in a bearer by virtue of the presence of its reaction to a stimulus or an agent." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0000077 ! response
***************
*** 2703,2706 ****
--- 2712,2716 ----
  name: unresponsive
  def: "A quality inhering in a bearer by virtue of the lack of its reaction to a stimulus or an agent." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0000077 ! response
***************
*** 2840,2843 ****
--- 2850,2854 ----
  name: insensitive
  def: "A quality of lacking sensitivity." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  related_synonym: "resistant" []
***************
*** 2860,2863 ****
--- 2871,2875 ----
  name: sensitive
  def: "A quality of having sensitivity." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0000085 ! sensitivity
***************
*** 3011,3014 ****
--- 3023,3028 ----
  id: PATO:0000546
  name: photoinsensitive
+ subset: relational_slim
+ subset: value_slim
  related_synonym: "photoresistant" []
  is_a: PATO:0000927 ! photosensitivity
***************
*** 3017,3020 ****
--- 3031,3036 ----
  id: PATO:0000547
  name: photosensitive
+ subset: relational_slim
+ subset: value_slim
  is_a: PATO:0000927 ! photosensitivity

***************
*** 3589,3592 ****
--- 3605,3609 ----
  id: PATO:0000642
  name: fused
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001452 ! relational structural quality
***************
*** 3644,3647 ****
--- 3661,3665 ----
  id: PATO:0000651
  name: unfused
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001452 ! relational structural quality
***************
*** 4257,4260 ****
--- 4275,4279 ----
  name: increased consumption
  def: "A consumption which is relative high." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  related_synonym: "increased propensity to consume" []
***************
*** 4265,4268 ****
--- 4284,4288 ----
  name: decreased consumption
  def: "A consumption which is relative low." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  related_synonym: "decreased propensity to consume" []
***************
*** 5099,5102 ****
--- 5119,5124 ----
  id: PATO:0000927
  name: photosensitivity
+ subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0000085 ! sensitivity

***************
*** 5774,5777 ****
--- 5796,5800 ----
  name: susceptibility
  subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0000085 ! sensitivity

***************
*** 6331,6334 ****
--- 6354,6358 ----
  id: PATO:0001152
  name: susceptible
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001043 ! susceptibility
***************
*** 6337,6340 ****
--- 6361,6365 ----
  id: PATO:0001153
  name: insusceptible
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001043 ! susceptibility
***************
*** 6389,6398 ****
  id: PATO:0001162
  name: increased concentration
! is_obsolete: true

  [Term]
  id: PATO:0001163
  name: decreased concentration
! is_obsolete: true

  [Term]
--- 6414,6425 ----
  id: PATO:0001162
  name: increased concentration
! subset: value_slim
! is_a: PATO:0000033 ! concentration

  [Term]
  id: PATO:0001163
  name: decreased concentration
! subset: value_slim
! is_a: PATO:0000033 ! concentration

  [Term]
***************
*** 6551,6554 ****
--- 6578,6582 ----
  id: PATO:0001191
  name: medial
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001631 ! relational spatial quality
***************
*** 6558,6561 ****
--- 6586,6590 ----
  name: hyperresponsive
  def: "A quality inhering in a bearer by virtue of its excessive reaction to a stimulus or an agent." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0000077 ! response
***************
*** 6564,6567 ****
--- 6593,6597 ----
  id: PATO:0001193
  name: lateral
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001631 ! relational spatial quality
***************
*** 6571,6574 ****
--- 6601,6605 ----
  name: hyporesponsive
  def: "A quality inhering in a bearer by virtue of its limited reaction to a stimulus or an agent." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0000077 ! response
***************
*** 6577,6580 ****
--- 6608,6612 ----
  id: PATO:0001195
  name: proximal
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001631 ! relational spatial quality
***************
*** 6583,6586 ****
--- 6615,6619 ----
  id: PATO:0001196
  name: ventral
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001631 ! relational spatial quality
***************
*** 6652,6655 ****
--- 6685,6689 ----
  name: odorless
  def: "A quality of lacking odour." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0000058 ! odor
***************
*** 6785,6788 ****
--- 6819,6823 ----
  id: PATO:0001233
  name: dorsal
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001631 ! relational spatial quality
***************
*** 6791,6794 ****
--- 6826,6830 ----
  id: PATO:0001234
  name: distal
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001631 ! relational spatial quality
***************
*** 6815,6818 ****
--- 6851,6855 ----
  name: relational quality of continuant
  subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0001241 ! quality of continuant

***************
*** 6827,6830 ****
--- 6864,6868 ----
  name: relational quality of occurrent
  subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0001236 ! quality of occurrent

***************
*** 7413,7416 ****
--- 7451,7455 ----
  name: flavourful
  def: "A quality of having flavour." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0000043 ! flavor
***************
*** 7420,7423 ****
--- 7459,7463 ----
  name: flavourless
  def: "A quality of lacking flavour." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0000043 ! flavor
***************
*** 7427,7430 ****
--- 7467,7471 ----
  name: odorous
  def: "A quality of having odour." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0000058 ! odor
***************
*** 8135,8138 ****
--- 8176,8180 ----
  comment: The definition is general enough to cover adhesion arising from different kinds of chemical bonding/forces, although for PATO this term will most commonly used for cellular adhesion. See also GO:0031589 "cell-substrate adhesion".
  subset: attribute_slim
+ subset: relational_slim
  related_synonym: "stickiness" []
  exact_synonym: "adhesiveness" []
***************
*** 8201,8204 ****
--- 8243,8247 ----
  id: PATO:0001441
  name: heterophilic
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001531 ! cellular adhesivity
***************
*** 8283,8286 ****
--- 8326,8330 ----
  name: relational structural quality
  subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0001238 ! relational quality of continuant

***************
*** 8289,8292 ****
--- 8333,8337 ----
  name: detached
  def: "A relational structural quality inhering in a bearer by virtue of lacking connection or association with another entity." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  related_synonym: "detached_from" []
***************
*** 8298,8301 ****
--- 8343,8347 ----
  def: "A sensitivity quality inhering in an entity by virtue of its dependence on oxygen." [PATOC:GVG]
  subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0000085 ! sensitivity

***************
*** 8304,8307 ****
--- 8350,8354 ----
  name: aerobic
  def: "A quality inhearing in a bearer by virtue of its dependence on oxygen." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001454 ! sensitivity to oxygen
***************
*** 8311,8314 ****
--- 8358,8362 ----
  name: anaerobic
  def: "A quality inhearing in a bearer by virtue of its independence on oxygen." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001454 ! sensitivity to oxygen
***************
*** 8319,8322 ****
--- 8367,8371 ----
  def: "A relational quality of occurrent inhering in an entity by virtue of its capacity to respond to stimulation." [PATOC:GVG]
  subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0001240 ! relational quality of occurrent

***************
*** 8326,8329 ****
--- 8375,8379 ----
  def: "A sensitivity of occurrent quality inhering in an entity by virtue of it unfolding in a location with or without oxygen." [PATOC:GVG]
  subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0001457 ! sensitivity of occurrent

***************
*** 8332,8335 ****
--- 8382,8386 ----
  name: aerobic (for occurrence)
  def: "A quality inhering in a biological process by virtue of the process unfolding in a location with oxygen." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001458 ! sensitivity of occurrent to oxygen
***************
*** 8339,8342 ****
--- 8390,8394 ----
  name: anaerobic (for occurrence)
  def: "A quality inhering in a biological process by virtue of the process unfolding in a location without oxygen." [PATOC:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001458 ! sensitivity of occurrent to oxygen
***************
*** 8409,8412 ****
--- 8461,8465 ----
  comment: Examples: height to weight; brain size to body size. These could all be children of proportionality. Proportions can be measured as ratios. Some measures may be dimensionless. Not all ratios measure proportionality, eg m/s measures velocity which is not a proportion in the sense defined above, it is a quality in its own right.
  subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0001238 ! relational quality of continuant

***************
*** 8415,8418 ****
--- 8468,8472 ----
  name: superficial
  def: "Located near a surface." [Dictionary.com:Dictionary.com "http://dictionary.reference.com/"]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001631 ! relational spatial quality
***************
*** 8651,8654 ****
--- 8705,8709 ----
  name: separated
  def: "A relational structural quality inhering in a bearer by virtue of no longer being connected or joined with another entity." [WordNet:WordNet "http://wordnet.princeton.edu/"]
+ subset: relational_slim
  subset: value_slim
  related_synonym: "divided" []
***************
*** 8660,8663 ****
--- 8715,8719 ----
  name: diastatic
  def: "Separation of normally joined parts, such as the separation of adjacent bones without fracture or of certain abdominal muscles during pregnancy." [answers.com:answers.com "http://www.answers.com/"]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001505 ! separated
***************
*** 8834,8837 ****
--- 8890,8894 ----
  def: "A cellular quality that exists by virtue of the capacity of the cell to adhere to other cells and molecules, through the emergent action of the molecular parts of the cell surface." [PATOC:cjm]
  subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0001431 ! adhesivity

***************
*** 8870,8873 ****
--- 8927,8931 ----
  def: "A relational quality that arises from its potential ability of a substance to dissolve in a liquid." [edp:edp "www.edp-uk.com/glossaries/terms.htm"]
  subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0001238 ! relational quality of continuant

***************
*** 8876,8879 ****
--- 8934,8938 ----
  name: soluble
  def: "A solubility quality that arises from the ability of a substance to dissolve in a liquid." [edp:edp "www.edp-uk.com/glossaries/terms.htm"]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001536 ! solubility
***************
*** 8883,8886 ****
--- 8942,8946 ----
  name: insoluble
  def: "A solubility quality that arises from the inability of a substance to dissolve in a liquid." [edp:edp "www.edp-uk.com/glossaries/terms.htm"]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001536 ! solubility
***************
*** 8955,8958 ****
--- 9015,9019 ----
  name: increased sensitivity
  def: "A sensitivity which is higher than normal/average." [PATO:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0000085 ! sensitivity
***************
*** 8962,8965 ****
--- 9023,9027 ----
  name: decreased sensitivity
  def: "A sensitivity which is lower than normal/average." [PATO:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0000085 ! sensitivity
***************
*** 8969,8972 ****
--- 9031,9035 ----
  name: increased sensitivity of occurrent
  def: "A sensitivity of occurrent which is higher than normal/average." [PATO:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001457 ! sensitivity of occurrent
***************
*** 8976,8979 ****
--- 9039,9043 ----
  name: decreased sensitivity of occurrent
  def: "A sensitivity of occurrent which is lower than normal/average." [PATO:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001457 ! sensitivity of occurrent
***************
*** 8983,8986 ****
--- 9047,9051 ----
  name: increased sensitivity of occurrent to oxygen
  def: "A sensitivity of occurrent to oxygen which is higher than normal/average." [PATO:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001458 ! sensitivity of occurrent to oxygen
***************
*** 8990,8993 ****
--- 9055,9059 ----
  name: decreased sensitivity of occurrent to oxygen
  def: "A sensitivity of occurrent to oxygen which is lower than normal/average." [PATO:GVG]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001458 ! sensitivity of occurrent to oxygen
***************
*** 8996,8999 ****
--- 9062,9067 ----
  id: PATO:0001555
  name: extra or missing physical parts
+ subset: attribute_slim
+ subset: relational_slim
  exact_synonym: "mereological quality" []
  is_a: PATO:0001238 ! relational quality of continuant
***************
*** 9002,9005 ****
--- 9070,9075 ----
  id: PATO:0001556
  name: lacking function
+ subset: relational_slim
+ subset: value_slim
  is_a: PATO:0001555 ! extra or missing physical parts

***************
*** 9007,9010 ****
--- 9077,9082 ----
  id: PATO:0001557
  name: lacking physical parts
+ subset: relational_slim
+ subset: value_slim
  is_a: PATO:0001555 ! extra or missing physical parts

***************
*** 9012,9015 ****
--- 9084,9089 ----
  id: PATO:0001558
  name: lacking processual parts
+ subset: relational_slim
+ subset: value_slim
  is_a: PATO:0001564 ! extra or missing processual parts

***************
*** 9017,9020 ****
--- 9091,9096 ----
  id: PATO:0001559
  name: having supernumerary functions
+ subset: relational_slim
+ subset: value_slim
  is_a: PATO:0001555 ! extra or missing physical parts

***************
*** 9022,9025 ****
--- 9098,9103 ----
  id: PATO:0001560
  name: having supernumerary physical parts
+ subset: relational_slim
+ subset: value_slim
  is_a: PATO:0001555 ! extra or missing physical parts

***************
*** 9027,9030 ****
--- 9105,9110 ----
  id: PATO:0001561
  name: having supernumerary processual parts
+ subset: relational_slim
+ subset: value_slim
  is_a: PATO:0001564 ! extra or missing processual parts

***************
*** 9045,9048 ****
--- 9125,9129 ----
  id: PATO:0001564
  name: extra or missing processual parts
+ subset: relational_slim
  is_a: PATO:0001240 ! relational quality of occurrent

***************
*** 9068,9071 ****
--- 9149,9154 ----
  id: PATO:0001568
  name: having decreased functions
+ subset: relational_slim
+ subset: value_slim
  is_a: PATO:0001555 ! extra or missing physical parts

***************
*** 9073,9076 ****
--- 9156,9161 ----
  id: PATO:0001569
  name: having decreased physical parts
+ subset: relational_slim
+ subset: value_slim
  is_a: PATO:0001555 ! extra or missing physical parts

***************
*** 9078,9081 ****
--- 9163,9168 ----
  id: PATO:0001570
  name: having decreased processual parts
+ subset: relational_slim
+ subset: value_slim
  is_a: PATO:0001564 ! extra or missing processual parts

***************
*** 9471,9474 ****
--- 9558,9563 ----
  id: PATO:0001631
  name: relational spatial quality
+ subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0001238 ! relational quality of continuant

***************
*** 9476,9479 ****
--- 9565,9570 ----
  id: PATO:0001632
  name: anterior
+ subset: relational_slim
+ subset: value_slim
  is_a: PATO:0001631 ! relational spatial quality

***************
*** 9481,9484 ****
--- 9572,9577 ----
  id: PATO:0001633
  name: posterior
+ subset: relational_slim
+ subset: value_slim
  is_a: PATO:0001631 ! relational spatial quality

***************
*** 9555,9564 ****
  def: "A relational quality inhering into a bearer by virtue of its extending out above or beyond in relation to the surface or boundary of another entity." [PATOC:GVG]
  subset: attribute_slim
  is_a: PATO:0001647 ! relational shape quality

  [Term]
  id: PATO:0001645
! name:  protruding into
  def: "A relational protruding quality inhering into a bearer by virtue of its extending out above or beyond its surface or boundary into the surface or boundary of another entity." [PATOC:nc]
  subset: value_slim
  is_a: PATO:0001644 ! relational protruding quality
--- 9648,9659 ----
  def: "A relational quality inhering into a bearer by virtue of its extending out above or beyond in relation to the surface or boundary of another entity." [PATOC:GVG]
  subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0001647 ! relational shape quality

  [Term]
  id: PATO:0001645
! name: protruding into
  def: "A relational protruding quality inhering into a bearer by virtue of its extending out above or beyond its surface or boundary into the surface or boundary of another entity." [PATOC:nc]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001644 ! relational protruding quality
***************
*** 9568,9571 ****
--- 9663,9667 ----
  name: protruding out of
  def: "A relational protruding quality inhering into a bearer by virtue of its extending out above or beyond its surface or boundary and outwards in relation to the physical space occupied by another entity." [PATOC:nc]
+ subset: relational_slim
  subset: value_slim
  is_a: PATO:0001644 ! relational protruding quality
***************
*** 9574,9577 ****
--- 9670,9675 ----
  id: PATO:0001647
  name: relational shape quality
+ subset: attribute_slim
+ subset: relational_slim
  is_a: PATO:0001238 ! relational quality of continuant

***************
*** 9583,9586 ****
--- 9681,9702 ----
  is_a: PATO:0000122 ! length

+ [Term]
+ id: PATO:0001649
+ name: curved lateral
+ subset: value_slim
+ is_a: PATO:0000406 ! curved
+ 
+ [Term]
+ id: PATO:0001650
+ name: increased resistance
+ subset: value_slim
+ is_a: PATO:0001046 ! resistance
+ 
+ [Term]
+ id: PATO:0001651
+ name: decreased resistance
+ subset: value_slim
+ is_a: PATO:0001046 ! resistance
+ 
  [Typedef]
  id: is_magnitude_of