Names of menu/Buttons are sometimes confusing. "Add Module"- should be "Add Folder". "Cache Default Settings" - should be "Save Default Settings". "Record Template Input" - should be "Edit Template Input".
Also I have couple suggestions re Project files UI. In Add Template Instance dialog – it will be good to allow copy of “Template name” from the list to the new Name textbox. In “Select Tables" section it will be good to add “Check boxes” and button “Toggle selected” (may be also “Select All”/”Deselect All”). It also will be good to have Tables and Views as tabs and remember selection if someone changed from Tables to Views and vise Versa.
Related article http://www.mygenerationsoftware.com/TemplateLibrary/Article/?guid=a43e9a73-e046-4ce1-bcef-67e013784300