How to see the complete overlapped sequence

2012-12-28
2013-05-20
  • Hi. I am using mummer to align 10 assemblies. Is it possible to get the whole sequence which contains the overlapped and non-overlapped part from all assemblies. For example:

    Contig 1: ATGCTTTttgctgcctcgccgctgcgcgcgtgc
    Contig 2: ttgctgcctcgccgctgcgcgcgtgcAGCTTAG

    Result i need is : ATGCTTTttgctgcctcgccgctgcgcgcgtgcAGCTTAG

    If someone can give me script or parameter which i can set in mummer it will be great. for email engr.ahmerjamil@gmail.com