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Wine can be use native. Yes all those windows specific code can be emulated
until you can remove it. Wine tool kit can be used to build a native linux
executable calling the winelib to emulate the windows parts. Funny part is
that wine is now starting to build dlls for windows its getting waped.
autoconf system is one methrod. Using kdedevelop is another. And if you don't
like make there is always jam or scons.
You will find that linux has alot more than minor differences.
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