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I'm unable to save an .anl file after running several SAM and cluster analyses on a small dataset (2600 genes x 10 conditions). I am using MeV 4.8 on Mac OSX 10.6.8, and I have already checked that the memory allotted to MeV is 1024, using the recommended procedure in the FAQ.
When I save the analysis, I see the blue progress bar and it completes within a minute or two (i.e. does not get hung up for hours). But, there is no file saved in the location I specified after the apparent save is complete.
Is this an OS issue or something fixable?
Many thanks in advance,