unable to load RNA-seq data

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Anonymous
2012-03-28
2013-05-20

  • Anonymous
    2012-03-28

    I formatted RNAseq data according to the MeV manual, and uploaded a library size file.  MeV has a window titled "Slide Data Loading" that has been at Remain: 0% File 0% for about 20 minutes.  I'm using human data, so no need to upload an annotation file.  Any help is greatly appreciated, since I'm writing my thesis now.

     
  • amyp
    amyp
    2012-03-30

    Spoke with someone on the MeV team, and the solution is to format everything to "text" in excel before exporting to .txt and uploading into MeV.  Data loads fine now.

     
  • hlwright
    hlwright
    2013-01-22

    Amy, I am having the same problem but formatting everything to "text" hasn't solved the issue. Any other ideas?  Did you get the RNA-Seq analysis working once you got the data uploaded?

     
  • I am also having this problem. My two files (the user annotation and the count file) are in text format according the Mev Manual rules, but the program is not able to load them. It stays on "Remain: 0% File 0%" forever.
    Any help would be valious.
    Thanks