I also created a mini acinclude.m4 that had just the following lines:
m4_include([m4/R.m4])
m4_include([m4/acx_blas.m4])
m4_include([m4/acx_fortran.m4])
m4_include([m4/acxx_lapack.m4])
m4_include([m4/libtool.m4])
this seems to work, but I have not had time to test it much.
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I managed to get JAGS to compile under Fedora Core 5 by rebuilding the autoconfig stuff. Here are the steps I used.
Here is what I needed to do to get JAGS to compile on my system.
1) Find location of f77 and set F77 variable:
setenv F77 gfortran
2) Find and identify location of blas and lapack /usr/lib64/libXXX.so
3) Recreate aclocal.m4
aclocal
4) Get files missing for automake:
cp /usr/share/automake-1.9/install-sh .
cp /usr/share/automake-1.9/config.* .
cp /usr/share/automake-1.9/missing .
cp /usr/share/automake-1.9/INSTALL .
cp /usr/share/automake-1.9/compile .
cp /usr/share/automake-1.9/depcomp .
cp /usr/share/libtool/ltmain.sh .
5) Run automake
automake
6) Run autoconf/automake in libltdl director
cp install-sh config.* missing ltmain.sh libltdl
cd libltdl
aclocal
autoconf
automake
cd ..
7) configure
./configure --prefix=$HOME '--with-blas=/usr/lib64/libblas.so' '--with-lapack=/
usr/lib64/liblapack.so' 'F77=gfortran'
8) make
I also created a mini acinclude.m4 that had just the following lines:
m4_include([m4/R.m4])
m4_include([m4/acx_blas.m4])
m4_include([m4/acx_fortran.m4])
m4_include([m4/acxx_lapack.m4])
m4_include([m4/libtool.m4])
this seems to work, but I have not had time to test it much.