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From: Nils H. <nil...@we...> - 2015-05-28 18:59:06
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Hi Witold, thank you for your report. My apologies for the bad user experience. There are two things to note: 1. The current trunk version is unstable, I would ask you to clone a release branch (e.g. the next one: release-1.4.0) 2. Maltcms will currently only build with JDK 7 due to issues with the groovy/java joint compilation in some modules >From your clone, please run a > git fetch origin > git checkout release-1.4.0 Then run > mvn install and everything should build fine. Please note that the integration tests are disabled by default, since they may take a long time and use a lot of memory. You can enable them by passing -DskipITs=false on the Maven command line: >MAVEN_OPTS="-Xmx4G -Xms256M" mvn -DskipITs=false install You will need to set the MAVEN_OPTS, otherwise, the tests will run into OutOfMemoryErrors. It might work with less than 4G, but that is the setting on the Jenkins Build server that I use for continuous integration. Please note that a number of the Integration Tests currently fail, but I will fix them before the release :-). Best regards, Nils Am 27.05.15 um 23:27 schrieb Witold E Wolski: > I am trying to follow the instructions on : > http://maltcms.sourceforge.net/maven/maltcms/1.3.2/documentation/development/index.html > > And muild maltcms on mac os x 10.9.5 > java version "1.8.0_25" > Apache Maven 3.2.5 > > > After running: > git clone git://git.code.sf.net/p/maltcms/code > <http://git.code.sf.net/p/maltcms/code> maltcms-code > mvn install > > I needed to fix the pom.xml in jmzml (wrong parent pom version). > > Now I have a problem with a failing test: > Tests run: 3, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.765 > sec <<< FAILURE! - in maltcms.datastructures.ms.Chromatogram2DTest > > public Tuple2D<Array, Array> getSparseMassSpectrum(int x, int y) > in SparseScanLineCache > returns null > > causing a NullPointerException in the caller code. > > > best > Witold > > > best regards > Witold > > > -- > Witold Eryk Wolski > > > > ------------------------------------------------------------------------------ > > > _______________________________________________ > Maltcms-user mailing list > Mal...@li... > https://lists.sourceforge.net/lists/listinfo/maltcms-user |
From: Witold E W. <wew...@gm...> - 2015-05-27 21:28:04
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I am trying to follow the instructions on : http://maltcms.sourceforge.net/maven/maltcms/1.3.2/documentation/development/index.html And muild maltcms on mac os x 10.9.5 java version "1.8.0_25" Apache Maven 3.2.5 After running: git clone git://git.code.sf.net/p/maltcms/code maltcms-code mvn install I needed to fix the pom.xml in jmzml (wrong parent pom version). Now I have a problem with a failing test: Tests run: 3, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0.765 sec <<< FAILURE! - in maltcms.datastructures.ms.Chromatogram2DTest public Tuple2D<Array, Array> getSparseMassSpectrum(int x, int y) in SparseScanLineCache returns null causing a NullPointerException in the caller code. best Witold best regards Witold -- Witold Eryk Wolski |