Here's another "new" error when using the new contribs:

 Exodus Library Error: [ex_put_block]
Error: failed to define number of nodes/entity for element block 507 in file id 131072
[-41] netcdf constraint NC_MAX_DIMS exceeded
 Error writing element block.
 Stack frames: 14
 0: 0 libmesh_dbg.0.dylib    0x000000010c0560e3 libMesh::print_trace(std::ostream&) + 39
 1: 1 libmesh_dbg.0.dylib    0x000000010c3ea89b libMesh::ExodusII_IO_Helper::check_err(int, std::string) + 103
 2: 2 libmesh_dbg.0.dylib    0x000000010c3f1217 libMesh::ExodusII_IO_Helper::write_elements(libMesh::MeshBase const&) + 1165
 3: 3 libmesh_dbg.0.dylib    0x000000010c3e62db libMesh::ExodusII_IO::write_nodal_data(std::string const&, std::vector<double, std::allocator<double> > const&, std::vector<std::string, std::allocator<std::string> > const&) + 513
 4: 4 libmesh_dbg.0.dylib    0x000000010c4a144c libMesh::MeshOutput<libMesh::MeshBase>::write_equation_systems(std::string const&, libMesh::EquationSystems const&, std::set<std::string, std::less<std::string>, std::allocator<std::string> > const*) + 756
 5: 5 libmesh_dbg.0.dylib    0x000000010c3e69a2 libMesh::ExodusII_IO::write_timestep(std::string const&, libMesh::EquationSystems const&, int, double) + 76
 6: 6 libmoose-dbg.0.dylib    0x000000010ad3043d ExodusOutput::output(std::string const&, double) + 279
 7: 7 libmoose-dbg.0.dylib    0x000000010ad34502 Output::output() + 86
 8: 8 libmoose-dbg.0.dylib    0x000000010ab4bd8f FEProblem::output(bool) + 125
 9: 9 libmoose-dbg.0.dylib    0x000000010ac62b14 Steady::execute() + 772
 10: 10 libmoose-dbg.0.dylib     0x000000010abbf7cf MooseApp::executeExecutioner() + 65
 11: 11 libmoose-dbg.0.dylib     0x000000010abbff45 MooseApp::run() + 165
 12: 12 pronghorn-dbg     0x00000001091f2385 main + 102
 13: 13 libdyld.dylib     0x00007fff939fa7e1 start + 0
 [0] src/mesh/exodusII_io_helper.C, line 235, compiled Feb 12 2013 at 10:09:24
 terminate called after throwing an instance of 'libMesh::LogicError'
   what():  Error in libMesh internal logic
 [thearchitect:95296] *** Process received signal ***
 [thearchitect:95296] Signal: Abort trap: 6 (6)
 [thearchitect:95296] Signal code:  (0)
 [thearchitect:95296] *** End of error message ***

We have a number of tests that have started failing that use several hundred subdomains.  I haven't dived into this at all yet, but on the surface it looks like we might need to call additional API functions or something in our ExodusII_IO wrappers.

Just an FYI - I'll let you know when I get a chance to investigate.
Cody



On Tue, Feb 12, 2013 at 12:56 PM, Derek Gaston <friedmud@gmail.com> wrote:
Ok - we'll just stick to the old stuff for now until we can distribute HDF5.

Derek


On Tue, Feb 12, 2013 at 12:55 PM, Kirk, Benjamin (JSC-EG311) <benjamin.kirk-1@nasa.gov> wrote:
I think it is possible to use the new exodus even with the netcdf4 symbols missing, but I'm not sure yet what aspect of the new functionality will be reduced.

-Ben



On Feb 12, 2013, at 1:28 PM, "Derek Gaston" <friedmud@gmail.com> wrote:

Didn't CC the list...

---------- Forwarded message ----------
From: Derek Gaston <friedmud@gmail.com>
Date: Tue, Feb 12, 2013 at 12:27 PM
Subject: Re: [Libmesh-devel] Build Error
To: "Kirk, Benjamin (JSC-EG311)" <benjamin.kirk-1@nasa.gov>


On Tue, Feb 12, 2013 at 12:24 PM, Kirk, Benjamin (JSC-EG311) <benjamin.kirk-1@nasa.gov> wrote:
This happens when HDF5 is not properly found, disabling netcdf4, but exodusII is still looking for that symbol

I tried just --disable-hdf5 and that didn't do it either.

Also - it's "--enable-netcdf=old" right?  Not "with"?  Or do both work?

I can verify that turning everything (nemesis, netcdf, exodus) back to old _does_ still work.  But is kind of a bummer ;-)

Going forward it looks like we (the MOOSE team) should distribute HDF5 to our users....

Derek 

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