Hello

I appreciate a lot your help.
Thank you very much for this fast reply.

I tried the same configure as you did  (below)
and make, it seems It did not work.

Tahar


[Imac-Intel-de-Tahar-Amari:/usr/local/libmesh-0.6.0] amari% sudo ./configure --disable-gmv
Password:
---------------------------------------------
----------- Configuring libMesh -------------
---------------------------------------------
checking build system type... i686-apple-darwin8.10.1
checking host system type... i686-apple-darwin8.10.1
checking target system type... i686-apple-darwin8.10.1
checking for g++... g++
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
<<< C++ compiler is gcc-4.0 >>>
checking how to run the C++ preprocessor... g++ -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for short int... yes
checking size of short int... 2
checking for int... yes
checking size of int... 4
checking for long int... yes
checking size of long int... 4
checking for float... yes
checking size of float... 4
checking for double... yes
checking size of double... 8
checking for void *... yes
checking size of void *... 4
checking getopt.h usability... yes
checking getopt.h presence... yes
checking for getopt.h... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler has locale... yes
checking whether the compiler has stringstream... yes
checking hash_map usability... no
checking hash_map presence... no
checking for hash_map... no
checking ext/hash_map usability... yes
checking ext/hash_map presence... yes
checking for ext/hash_map... yes
checking hash_set usability... no
checking hash_set presence... no
checking for hash_set... no
checking ext/hash_set usability... yes
checking ext/hash_set presence... yes
checking for ext/hash_set... yes
<<< Configuring library with AMR support >>>
<<< Configuring library with periodic BC support >>>
<<< Configuring library with higher order p-FEM shapes >>>
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for xdrstdio_create... yes
<<< Configuring library with XDR support >>>
<<< Configuring library with real number support >>>
<<< Configuring library with reference counting support >>>
checking for ./contrib/netcdf/lib/i686-apple-darwin8.10.1/libnetcdf.a... no
checking for ./contrib/netcdf/include/netcdf.h... no
---------------------------------------------
----- Configuring for optional packages -----
---------------------------------------------
checking for /usr/local/petsc//include/petsc.h... yes
checking for g77... no
checking for f77... f77
checking whether we are using the GNU Fortran 77 compiler... no
checking whether f77 accepts -g... no
checking how to get verbose linking output from f77... configure: WARNING: compilation failed

checking for Fortran libraries of f77...
<<< Configuring library with PETSc version 2.3.3 support >>>
checking for ./contrib/laspack/lastypes.h... yes
<<< Configuring library with LASPACK version 1.12.3 support >>>
checking for ./contrib/sfcurves/sfcurves.h... yes
<<< Configuring library with SFC support >>>
checking for ./contrib/gzstream/gzstream.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for gzopen in -lz... yes
<<< Configuring library with gzstreams support >>>
checking for ./contrib/tecplot/lib/i686-apple-darwin8.10.1/tecio.a... no
checking for ./contrib/tecplot/include/TECIO.h... yes
checking for ./contrib/metis/Lib/metis.h... yes
<<< Configuring library with Metis support >>>
checking for ./contrib/parmetis/Lib/parmetis.h... yes
<<< Configuring library with ParMetis support >>>
checking for doxygen... no
<<< Configuring library with TetGen support >>>
<<< Configuring library with Triangle support >>>
----------------------------------------------
--- Done configuring for optional packages ---
----------------------------------------------
checking for perl... /usr/bin/perl
configure: creating ./config.status
config.status: creating Make.common
config.status: creating doc/Doxyfile
config.status: creating contrib/bin/libmesh-config
config.status: creating contrib/bin/xda2mgf
config.status: creating contrib/bin/create_libmesh_release
config.status: creating doc/dot
config.status: creating include/base/libmesh_contrib_config.h
config.status: creating include/base/libmesh_config.h
---------------------------------------------
--------- Done Configuring libMesh ----------
---------------------------------------------
[Imac-Intel-de-Tahar-Amari:/usr/local/libmesh-0.6.0] amari% sudo make
Compiling C++ (in optimized mode) src/base/dof_map.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/base/dof_map_constraints.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/base/dof_object.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/base/libmesh.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/base/node.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/base/reference_counter.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_base.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_bernstein.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_bernstein_shape_1D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_bernstein_shape_2D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_bernstein_shape_3D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_boundary.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_clough.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_clough_shape_1D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_clough_shape_2D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_clough_shape_3D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_compute_data.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_hermite.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_hermite_shape_1D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_hermite_shape_2D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_hermite_shape_3D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_hierarchic.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_hierarchic_shape_1D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_hierarchic_shape_2D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_hierarchic_shape_3D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_interface.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_interface_inf_fe.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_lagrange.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_lagrange_shape_0D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_lagrange_shape_1D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_lagrange_shape_2D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_lagrange_shape_3D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_map.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_monomial.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_monomial_shape_1D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_monomial_shape_2D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_monomial_shape_3D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_szabab.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_szabab_shape_1D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_szabab_shape_2D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_szabab_shape_3D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_type.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_xyz.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_xyz_boundary.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_xyz_shape_1D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_xyz_shape_2D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/fe_xyz_shape_3D.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/inf_fe.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/inf_fe_base_radial.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/inf_fe_boundary.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/inf_fe_jacobi_20_00_eval.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/inf_fe_jacobi_30_00_eval.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/inf_fe_lagrange_eval.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/inf_fe_legendre_eval.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/inf_fe_map.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/inf_fe_map_eval.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/fe/inf_fe_static.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_hex.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_hex20.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_hex27.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_hex8.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_inf_hex.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_inf_hex16.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_inf_hex18.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_inf_hex8.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_inf_prism.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_inf_prism12.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_inf_prism6.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_prism.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_prism15.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_prism18.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_prism6.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_pyramid.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_pyramid5.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_tet.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_tet10.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/cell_tet4.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/edge.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/edge_edge2.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/edge_edge3.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/edge_edge4.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/edge_inf_edge2.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/elem.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/elem_quality.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/elem_refinement.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/elem_type.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/face_inf_quad.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/face_inf_quad4.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/face_inf_quad6.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/face_quad.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/face_quad4.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/face_quad8.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/face_quad9.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/face_tri.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/face_tri3.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/face_tri6.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/node_elem.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/plane.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/geom/sphere.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/boundary_info.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/boundary_mesh.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/diva_io.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/exodusII_io.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/fro_io.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/gmsh_io.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/gmv_io.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/gnuplot_io.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/inf_elem_builder.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/matlab_io.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/medit_io.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_base.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_communication.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_data.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_data_tetgen_support.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_data_unv_support.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_data_xdr_support.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_generation.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_iterators.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_modification.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_output.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_refinement.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_refinement_flagging.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_refinement_smoothing.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_smoother_laplace.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_smoother_vsmoother.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_tetgen_support.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_tools.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/mesh_triangle_support.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/off_io.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/patch.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/tecplot_io.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/tetgen_io.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/ucd_io.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/unv_io.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/xdr_head.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/xdr_io.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/xdr_mesh.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/xdr_mgf.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/mesh/xdr_soln.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/analytic_function.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/dense_matrix.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/dense_matrix_base.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/dense_submatrix.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/dense_subvector.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/dense_vector.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/dense_vector_base.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/discontinuity_measure.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/distributed_vector.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/eigen_solver.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/error_estimator.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/exact_error_estimator.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/fourth_error_estimators.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/function_base.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/hp_coarsentest.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/hp_selector.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/hp_singular.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/jump_error_estimator.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/kelly_error_estimator.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/laspack_linear_solver.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/laspack_matrix.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/laspack_vector.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/linear_solver.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/mesh_function.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/nonlinear_solver.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/numeric_vector.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/patch_recovery_error_estimator.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/petsc_linear_solver.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/petsc_matrix.C...
i686-apple-darwin8-g++-4.0.1: /Library/Frameworks/Intel_MKL.framework/Headers: linker input file unused because linking not done
Compiling C++ (in optimized mode) src/numerics/petsc_nonlinear_solver.C...
src/numerics/petsc_nonlinear_solver.C: In member function 'void PetscNonlinearSolver<T>::init() [with T = Number]':
src/numerics/petsc_nonlinear_solver.C:252:   instantiated from here
src/numerics/petsc_nonlinear_solver.C:179: error: 'SNESSetMonitor' was not declared in this scope
make: *** [src/numerics/petsc_nonlinear_solver.i686-apple-darwin8.10.1.opt.o] Error 1

--------------------------------------------
T. Amari
Centre de Physique Theorique
Ecole Polytechnique
91128 Palaiseau Cedex France
tel : 33 1 69 33 47 53
fax: 33 1 69 33 30 08
email: <mailto:amari@cpht.polytechnique.fr>
URL : http://www.cpht.polytechnique.fr/cpht/amari

Le 1 juil. 07 à 02:17, Kirk, Benjamin (JSC-EG) a écrit :

I have been running libmesh with petsc-2.3.2 on my dual-core macbook for a few months.  the main cvs tree works just fine, although I had to disable gmvread.  i'll fix that.  note that i am using a 4.2 version of gcc, although your 4.0.1 should be new enough to build the library.  i routinely use gcc 3.2 and 3.4 on other architectures.

elfboy(15)$ uname
Darwin
elfboy(16)$ ./configure --disable-gmv
---------------------------------------------
----------- Configuring libMesh -------------
---------------------------------------------
checking build system type... i686-apple-darwin8.10.1
checking host system type... i686-apple-darwin8.10.1
checking target system type... i686-apple-darwin8.10.1
checking for g++... g++
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
<<< C++ compiler is gcc-4.2 >>>
checking how to run the C++ preprocessor... g++ -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for short int... yes
checking size of short int... 2
checking for int... yes
checking size of int... 4
checking for long int... yes
checking size of long int... 4
checking for float... yes
checking size of float... 4
checking for double... yes
checking size of double... 8
checking for void *... yes
checking size of void *... 4
checking getopt.h usability... yes
checking getopt.h presence... yes
checking for getopt.h... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler has locale... yes
checking whether the compiler has stringstream... yes
checking hash_map usability... no
checking hash_map presence... no
checking for hash_map... no
checking ext/hash_map usability... yes
checking ext/hash_map presence... yes
checking for ext/hash_map... yes
checking hash_set usability... no
checking hash_set presence... no
checking for hash_set... no
checking ext/hash_set usability... yes
checking ext/hash_set presence... yes
checking for ext/hash_set... yes
<<< Configuring library with AMR support >>>
<<< Configuring library with periodic BC support >>>
<<< Configuring library with higher order p-FEM shapes >>>
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for xdrstdio_create... yes
<<< Configuring library with XDR support >>>
<<< Configuring library with real number support >>>
<<< Configuring library with reference counting support >>>
checking for ./contrib/netcdf/lib/i686-apple-darwin8.10.1/libnetcdf.a... no
checking for ./contrib/netcdf/include/netcdf.h... no
---------------------------------------------
----- Configuring for optional packages -----
---------------------------------------------
checking for /usr/local/petsc/2.3.2/include/petsc.h... yes
checking for g77... no
checking for f77... no
checking for xlf... no
checking for frt... no
checking for pgf77... no
checking for fort77... no
checking for fl32... no
checking for af77... no
checking for f90... no
checking for xlf90... no
checking for pgf90... no
checking for epcf90... no
checking for f95... no
checking for fort... no
checking for xlf95... no
checking for ifc... no
checking for efc... no
checking for pgf95... no
checking for lf95... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran...  -L/usr/local/gcc/4.2.0-beta/lib/gcc/i386-apple-darwin8.9.1/4.2.0 -L/usr/local/gcc/4.2.0-beta/lib/gcc/i386-apple-darwin8.9.1/4.2.0/../../.. -lgfortranbegin -lgfortran -lgcc_s.10.4 -lSystem
<<< Configuring library with PETSc version 2.3.2 support >>>
checking for ./contrib/laspack/lastypes.h... yes
<<< Configuring library with LASPACK version 1.12.3 support >>>
checking for ./contrib/sfcurves/sfcurves.h... yes
<<< Configuring library with SFC support >>>
checking for ./contrib/gzstream/gzstream.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for gzopen in -lz... yes
<<< Configuring library with gzstreams support >>>
checking for ./contrib/tecplot/lib/i686-apple-darwin8.10.1/tecio.a... no
checking for ./contrib/tecplot/include/TECIO.h... yes
checking for ./contrib/metis/Lib/metis.h... yes
<<< Configuring library with Metis support >>>
checking for ./contrib/parmetis/Lib/parmetis.h... yes
<<< Configuring library with ParMetis support >>>
checking for doxygen... /Applications/Doxygen.app/Contents/Resources/doxygen
checking for dot... /Applications/Doxygen.app/Contents/Resources/dot
<<< Configuring library with TetGen support >>>
<<< Configuring library with Triangle support >>>
----------------------------------------------
--- Done configuring for optional packages ---
----------------------------------------------
checking for perl... /usr/bin/perl
configure: creating ./config.status
config.status: creating Make.common
config.status: creating doc/Doxyfile
config.status: creating contrib/bin/libmesh-config
config.status: creating contrib/bin/xda2mgf
config.status: creating contrib/bin/create_libmesh_release
config.status: creating doc/dot
config.status: creating include/base/libmesh_contrib_config.h
config.status: creating include/base/libmesh_config.h
---------------------------------------------
--------- Done Configuring libMesh ----------
---------------------------------------------


elfboy(26)$ g++ -v
Using built-in specs.
Target: i386-apple-darwin8.9.1
Configured with: ../gcc-4.2.0-beta/configure --prefix=/usr/local/gcc/4.2.0-beta --enable-languages=c,c++,fortran
Thread model: posix
gcc version 4.2.0 20070410 (prerelease)



what is interesting is that your compiler seems to be trying to *link* each file, which is really odd.  Can you remove the '@' from line 489 in Make.common and see what the actual compile line is?  Something is odd...  perhaps you have some strange variables set in INCLUDE?

-Ben





<Make.common>