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It would be nice to allow kooldock to replace kicker's internal taskbar (perhaps make kooldock an applet?) - it's nice to have a persistent clock display/cpu usage graphs, but kooldock is much faster to use than kicker's taskbar...
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Probably in future something like that will be possible, but now yuo can only use kooldock and kicker simultaneously. If you want to have kicker not changed, then you can use kooldock with enable Xinerama support, that kooldock won't cover kicker window.