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It seems like jtreeview only allows flipping the tree around nodes in the array tree (the tree along the top of the window). Is there a way to flip the gene trees (along the left hand side)? It seems like I am unable to do this. Further, if the genetree and arraytree are identical is there a way to keep them linked? In this case it is of course not microarray data but still pretty useful in many situations.
Thanks in advance!
I haven't looked at the flipping code in a long time, and it is not well supported. If you add
a feature request for gene tree node flipping, I'll take a look when I get a chance
I am not sure what you mean by "keep them linked", do you mean specifically with regard to flipping or with regard to selection and navigation?