Priyashree,

 

piece of cake! And the Matlab interface is just an add-on, and since Matlab’s GUI is in Java, too you have just access to the full JOELib functionality, if you are familiar with Java!

 

DFS joelib2.algo.DFS

 

Since there exists tons of similarity metrics there is a helper class for vector cases:

joelib2.math.similarity.BasicFeatureMetrics

 

Hint: Try first to get familiar with JOELib. Mixing it from the beginning with Matlab or Weka is not the easiest thing.

 

Joerg

 


Von: priyashree_saxena@yahoo.co.in [mailto:priyashree_saxena@yahoo.co.in]
Gesendet: Montag, 17. Juli 2006 18:01
An: joerg.wegner
Betreff: Re: AW: [Joelib-devel] Molecular Fingerprinting

 

Hi Joerg,

 

I am trying to implement the Tanimoto Kernel which will give me a similarity measure between two compounds. So I need to have the capability to perform DFS on each compound and I also need to be able to return all paths of less than or equal to a length 'd'  from every node in a compound.

Are these functionalities available in the Joelib matlab toolkit. I am also facing some problems in the installation of Joelib2, I am unable to find the Joelib.jar file.

Thanks a lot for your prompt reply.

 

Regards,

Priyashree
"joerg.wegner" <joerg.wegner@web.de> wrote:

Priyashree,

 

what exactly is your goal? You can create BitStrings or binary or counted feature counts. Please let me know what exactly you need.

For similarity analysis there is already an additional helper class available.

 

Best regards, Joerg

 


Von: joelib-devel-bounces@lists.sourceforge.net [mailto:joelib-devel-bounces@lists.sourceforge.net] Im Auftrag von priyashree saxena
Gesendet: Samstag, 8. Juli 2006 20:58
An: joelib-devel@lists.sourceforge.net
Betreff: [Joelib-devel] Molecular Fingerprinting

 

Hi

 

I want to perform Molecular Fingerprinting, I read in the applications that JOELIB2 supports fingerprinting. Can you help me by specifying how I could do it on a molecule.

 

Thanks,

Priyashree Saxena

 


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