Re: [Jmol-users] introducing: SPICE

[E.L. W. <eg...@us...>]

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On Thursday 21 October 2004 15:04, Andreas Prlic wrote:
> I want to announce yet another project that uses Jmol, called SPICE:
>
> SPICE is a DAS client that used Jmol for the 3D visualization of protein
> strucutures.  DAS, the Distributed Annotation System, provides a
> communication protocol to exchange biological annotations.=20

Nice, and good that it's LGPL too. I've added a link here:

http://wiki.jmol.org/ApplicationsEmbeddingJmol

> To learn more about and try SPICE, please proceed to:
> http://www.efamily.org.uk/software/dasclients/spice/
>
> I will be happy to recieve feedback, suggestions, questions, opinions, et=
c.

I started the webstart link with javaws, which I thought was for webstart,=
=20
with my local 1.5.0 install... and the first thing it did was installing=20
1.4.2_06 :)

But then it proceeded... had to click away an ArrayIndexOutOfBoundsExceptio=
n,=20
but then it showed the DAS client :)

Looks very nice... A quick comment: the highlighted AA in the Jmol window i=
s=20
with size not scaled with the zoom factor of the protein itself... i.e. whe=
n=20
zooming in, the highlighted atoms seem to get smaller... what script was us=
ed=20
for highlighting the 'selected' amino acid? I guess if you would have used=
=20
spacefill 1.0 on those atoms, zooming in would work as expected...

Egon

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