From: Robert H. <ha...@st...> - 2012-12-10 17:30:26
|
Renjian found the compiler bug, and I've made a change to the VASP reader. That should be fixed now. No errors when loading vasp.xml first, then the others? Maybe? On Mon, Dec 10, 2012 at 6:58 AM, Paul Pillot < pau...@ac...> wrote: > > > > On Chrome MacOSX.6 > no error with vasp.xml and water.xodydata. > estron.cml reports the following error : > FileManager.getAtomSetCollectionFromFile(estron.cml) > starting HoverWatcher_7 > FileManager opening http://chemapps.stolaf.edu/jmol/jsmol/estron.cml > The Resolver thinks XmlCml > call loadScript org\jmol\adapter\readers\xml\XmlCmlReader.js > call loadScript org\jmol\adapter\readers\cifpdb\CifReader.js > call loadScript org\jmol\api\JmolLineReader.js -- required by > org.jmol.adapter.readers.cifpdb.CifReader > call loadScript org\jmol\adapter\smarter\Structure.js > Time for openFile(estron.cml): 2361 ms > File Error:Error reading XML: Cannot call method 'clear' of null > for file http://chemapps.stolaf.edu/jmol/jsmol/estron.cml > type xml > starting HoverWatcher_8 > script ERROR: Error reading XML: Cannot call method 'clear' of null > for file http://chemapps.stolaf.edu/jmol/jsmol/estron.cml > type xml > ---- > load >> "estron.cml" << > Script completed > Jmol script terminated > > Paul > > PS: (this may help) jQuery offers possibilities for parsing XML documents > with the $() function. > Here is a code example I've made to fetch pubmed abstracts from a PDB ID : > $.ajax({ > url: "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi", > data: { > db: "pubmed", > id: pId, > retmode: "xml", > rettype: "abstract" > }, > success: function(t){ > var $xml = $(t); > var txt = ''; > var pmc = $xml.find("ArticleId[IdType='pmc']").text(); > var volume = $xml.find("Volume").text(); > var revue = $xml.find("Title").text(); > var pages = $xml.find("MedlinePgn").text(); > var annee = $xml.find("Year:first").text(); > var doi = $xml.find("ArticleId[IdType='doi']").text(); > var abstract = $xml.find("AbstractText").text(); > > txt += '<br /><span class="label label-info">in</span> '+revue+' > '+annee+' n°'+volume+ ' p'+pages+' '; > ... > }); > Le 10 déc. 2012 à 13:22, Robert Hanson a écrit : > > I'd appreciate people testing > http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5 for those top > middle links involving loading of XML files (vasp.xml, estron.cml, and > water.xodydata). This uses the browser's own HTML document object model to > parse the XML files. It seems to be working on Firefox and MSIE under > Windows. > > If you get a file loading error, please click "show" to see the console, > clip that, and send it to me off-list. > > I know about the "this.atts is null" error that arises when you first load > vasp.xml and then load estron.cml. Trying to track that one down. > > Thanks, > > Bob > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > Chair, Chemistry Department > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > > ------------------------------------------------------------------------------ > LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial > Remotely access PCs and mobile devices and provide instant support > Improve your efficiency, and focus on delivering more value-add services > Discover what IT Professionals Know. Rescue delivers > > http://p.sf.net/sfu/logmein_12329d2d_______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > > ------------------------------------------------------------------------------ > LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial > Remotely access PCs and mobile devices and provide instant support > Improve your efficiency, and focus on delivering more value-add services > Discover what IT Professionals Know. Rescue delivers > http://p.sf.net/sfu/logmein_12329d2d > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry Chair, Chemistry Department St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |