Re: [Jmol-developers] Problems in calling Jmol

[Moon C. <mo...@gm...>]

I set the memory to 2GB in my virtual machine and have already change the
JVM to SUN, the problem is still here!
Any ideas?

Best Regards,
Moon

2011/12/5 Jonathan Gutow <gu...@uw...>

> I don't use the jmol.sh script  very often, but one possibility is that
> the memory defaults in it are too small for the virtual machine he is
> using.  Another guess is that he is using the IceTea JVM and not the
> Sun/Oracle JVM.  IceTea is getting better, but I've still had occasional
> problems with it.
>
> Jonathan
>
> On Dec 4, 2011, at 12:02 PM, Robert Hanson wrote:
>
> Hellow, Linux experts? What can you suggest for Moon?
>
> On Sun, Dec 4, 2011 at 12:44 AM, Moon Cheung <mo...@gm...> wrote:
>
>> It has the same problem in running Jmol.sh from the command line.This
>> time Jmol will stop at "Creating main window".
>> And once the problem occurs, it will occur continuously after i kill the
>> process.
>>
>> Best Regards
>> Moon
>>
>>
>> 2011/12/4 Robert Hanson <ha...@st...>
>>
>>> Does Jmol.sh run generally on your machine from the command line?
>>>
>>> On Sat, Dec 3, 2011 at 6:25 AM, Moon Cheung <mo...@gm...> wrote:
>>>
>>>> Hi,
>>>>
>>>> When i use system call in c to call Jmol under Linux(the code is
>>>> "(void)system("/opt/QtSDK/Projects/jmol-12.2.7/jmol.sh -s
>>>> /opt/QtSDK/Projects/testing3.pdb.spt")")
>>>> And testing3.pdb.spt is a Rasmol Script in the code.
>>>> There is a problem that the Jmol will stop running at Setting up drag
>>>> and drop.
>>>> This situation will occur 1 around 5 times.
>>>> What can i do with this situation?
>>>>
>>>> Best Regards,
>>>> Moon
>>>>
>>>>
>>>> ------------------------------------------------------------------------------
>>>> All the data continuously generated in your IT infrastructure
>>>> contains a definitive record of customers, application performance,
>>>> security threats, fraudulent activity, and more. Splunk takes this
>>>> data and makes sense of it. IT sense. And common sense.
>>>> http://p.sf.net/sfu/splunk-novd2d
>>>> _______________________________________________
>>>> Jmol-developers mailing list
>>>> Jmo...@li...
>>>> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>>>>
>>>>
>>>
>>>
>>> --
>>> Robert M. Hanson
>>> Professor of Chemistry
>>> St. Olaf College
>>> 1520 St. Olaf Ave.
>>> Northfield, MN 55057
>>> http://www.stolaf.edu/people/hansonr
>>> phone: 507-786-3107
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> All the data continuously generated in your IT infrastructure
>>> contains a definitive record of customers, application performance,
>>> security threats, fraudulent activity, and more. Splunk takes this
>>> data and makes sense of it. IT sense. And common sense.
>>> http://p.sf.net/sfu/splunk-novd2d
>>> _______________________________________________
>>> Jmol-developers mailing list
>>> Jmo...@li...
>>> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>>>
>>>
>>
>>
>> ------------------------------------------------------------------------------
>> All the data continuously generated in your IT infrastructure
>> contains a definitive record of customers, application performance,
>> security threats, fraudulent activity, and more. Splunk takes this
>> data and makes sense of it. IT sense. And common sense.
>> http://p.sf.net/sfu/splunk-novd2d
>> _______________________________________________
>> Jmol-developers mailing list
>> Jmo...@li...
>> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>>
>>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> ------------------------------------------------------------------------------
> All the data continuously generated in your IT infrastructure
> contains a definitive record of customers, application performance,
> security threats, fraudulent activity, and more. Splunk takes this
> data and makes sense of it. IT sense. And common sense.
> http://p.sf.net/sfu/splunk-novd2d
> _______________________________________________
> Jmol-developers mailing list
> Jmo...@li...
> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>
>
>                          Dr. Jonathan H. Gutow
> Chemistry Department                                gu...@uw...
> UW-Oshkosh                                          Office: 920-424-1326
> 800 Algoma Boulevard                                FAX:920-424-2042
> Oshkosh, WI 54901
>                 http://www.uwosh.edu/facstaff/gutow
>
>
>
> ------------------------------------------------------------------------------
> All the data continuously generated in your IT infrastructure
> contains a definitive record of customers, application performance,
> security threats, fraudulent activity, and more. Splunk takes this
> data and makes sense of it. IT sense. And common sense.
> http://p.sf.net/sfu/splunk-novd2d
> _______________________________________________
> Jmol-developers mailing list
> Jmo...@li...
> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>
>