[Jmol-developers] bug: zap molecule

[Dr. C. G. <chr...@ch...>]

Here is a  reproducable  bug:

I noticed it in STRAP but it can be reproduced with the stand alone Jmol

It can be reproduced on Linux with the following steps:

Download Jmol and start the script ./jmol

Open Jmol console



$ load /home/n/m1/pdb1sbt.ent
$ cartoon on

$ load append /home/n/m1/pdb1sbc.ent
2 models
$ cartoon on


Open ContextMenu select models [all]
Now both are shown

$ zoom
$ select all
3,876 atoms selected


$ zoom
$ select 1.1
1,955 atoms selected
$ cartoon off
$ zap 1.1
1,955 atoms deleted
1,921 atoms selected
$


The view is frozen. Not rotating. No menu items.
This is due to Exception:


Exception in thread "AWT-EventQueue-0" java.lang.ArrayIndexOutOfBoundsException: 3850
	at org.jmol.shapebio.BioShape.setModelClickability(Unknown Source)
	at org.jmol.shapebio.BioShapeCollection.setModelClickability(Unknown Source)
	at org.jmol.viewer.ShapeManager.setModelVisibility(Unknown Source)
	at org.jmol.viewer.Viewer.setModelVisibility(Unknown Source)
	at org.jmol.viewer.Viewer.renderScreenImage(Unknown Source)
	at org.jmol.viewer.Viewer.renderScreenImage(Unknown Source)


The Line numbers correspond to the current svn version.

Christoph