[Jmol-commits] SF.net SVN: jmol:[13295] trunk/Jmol/src/org/jmol/smiles/SmilesParser.java

[<ha...@us...>]

Revision: 13295
          http://jmol.svn.sourceforge.net/jmol/?rev=13295&view=rev
Author:   hansonr
Date:     2010-06-06 02:50:17 +0000 (Sun, 06 Jun 2010)

Log Message:
-----------
version=12.0.RC17_dev

# bug fix: RC16 probably has chirality errors.
# bug fix: square planar SP3 chirality inverted

Modified Paths:
--------------
    trunk/Jmol/src/org/jmol/smiles/SmilesParser.java

Modified: trunk/Jmol/src/org/jmol/smiles/SmilesParser.java
===================================================================
--- trunk/Jmol/src/org/jmol/smiles/SmilesParser.java	2010-06-06 02:42:16 UTC (rev 13294)
+++ trunk/Jmol/src/org/jmol/smiles/SmilesParser.java	2010-06-06 02:50:17 UTC (rev 13295)
@@ -1113,11 +1113,11 @@
       stereo[stereoFlag++] = aH;
     int nMax = 0;
     StringBuffer sMore = new StringBuffer();
-    for (int i = v.size(); --i >= 0;) {
+    for (int i = 0; i < v.size(); i++) {
       JmolEdge bond = (JmolEdge) v.get(i);
       JmolNode a = bond.getOtherAtom(atom);
       int n = a.getCovalentBondCount() - a.getCovalentHydrogenCount();
-      if (n == 1 && v.size() > 1) {
+      if (n == 1 && i < v.size() - 1) {
         StringBuffer s2 = new StringBuffer();
         s2.append("(");
         s2.append(SmilesBond.getBondOrderString(bond.getOrder()));


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