From: Phil C. <phi...@kc...> - 2009-11-02 12:29:54
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I have upgraded to 11.8 and it seems to behave in the 'proper' manner thanks Robert /Angel/Rolf and all Jmolers Phil Robert Hanson wrote: > What are the two versions you are using? Oh, I see 11.6.25 there -- > please upgrade the applet to 11.8. > > > > On Fri, Oct 30, 2009 at 11:52 AM, Phil Cunningham > <phi...@kc... <mailto:phi...@kc...>> wrote: > > HI > I have a protein, 2 chaind displaye din Jmol window both on the > web and > standalone > > on the web i use a script to select all Transmenebrane regions usng a > script Ior (reset them) > I intend to highligh or reset JUST the TM regions > > this is fine stand alone but within a web page my selection /colouring > works but also removes the rest of the protein chains too. > > the scripts are > > $ more resetAllTM > select 9-27:d or 45-63:d or 77-99:d or 126-141:d or 147-159:d or > 186-205:d; > wireframe 100; spacefill 100; colour grey > > select 9-27:b or 45-63:b or 77-99:b or 126-141:b or 147-159:b or > 186-205:b; > wireframe 100; spacefill 100; colour grey > > > $ more AllTM > hide none > select 9-27:d or 45-63:d or 77-99:d or 126-141:d or 147-159:d or > 186-205:d; > wireframe 150; spacefill 150; colour red > > select 9-27:b or 45-63:b or 77-99:b or 126-141:b or 147-159:b or > 186-205:b; > wireframe 150; spacefill 150; colour red > > > the same commands cut/paste into the colsole for the stand alone Jmol > produce my intended result > the web eliminates the non TM regions whilst displaying the TM's red > spacefill and red > > Am I under a misconception? > who can I persuade the web to mimic the standalone behavior > > You can view my effort at > http://www.kcl.ac.uk/ip/philcunningham/christer/oct09/3h90.html > the all tm button is on the right hand side > > hoping some one can help > thanks > Phil > > -- > Phil Cunningham > Senior Bioinformatics Officer > Room 3.157 Franklin Wilkins Building > Department of Biochemistry > King's College University of London > 150 Stanford Street > London SE1 9NH > > tel 020 7848 4239 > fax 020 7848 4500 > > email phi...@kc... <mailto:phi...@kc...> > > > ------------------------------------------------------------------------------ > Come build with us! The BlackBerry(R) Developer Conference in SF, CA > is the only developer event you need to attend this year. > Jumpstart your > developing skills, take BlackBerry mobile applications to market > and stay > ahead of the curve. Join us from November 9 - 12, 2009. Register now! > http://p.sf.net/sfu/devconference > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > <mailto:Jmo...@li...> > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Phil Cunningham Senior Bioinformatics Officer Room 3.157 Franklin Wilkins Building Department of Biochemistry King's College University of London 150 Stanford Street London SE1 9NH tel 020 7848 4239 fax 020 7848 4500 email phi...@kc... |