Re: [Jmol-developers] Highlighting Atoms

[Bob H. <ha...@st...>]

Brian, you can certainly continue with the 11.4 branch. There is nothing 
wrong with it. If your application is simple and you don't need any of 
the newer capabilities, 11.4 is fine. The changes for 11.5 can be seen at

 http://jmol.svn.sourceforge.net/viewvc/jmol/trunk/Jmol/src/org/jmol/viewer/Jmol.properties?view=markup

If you have done a lot of adapting that digs into the main classes, you 
may have trouble synchronizing. But if you have mostly not changed Jmol 
or made your classes extensions of the Jmol classes, then there 
shouldn't be any real problem. I would recommend at least checking the 
synchronization and seeing how much it would set you back. Have you done 
some extensive rewriting of the original code?

(If so, I think your license requires that you make that open source, 
right?)




Brian Ramos wrote:

> Bob,
>
> Since I have already started working on the 11.4 branch, is there 
> another way that I can get this done?
> Would you suggest just porting my code to 11.5?
>
> Thanks,
> Brian
>
>
> On Fri, Jun 13, 2008 at 6:43 PM, Bob Hanson <ha...@st... 
> <mailto:ha...@st...>> wrote:
>
>     Brian,
>
>
>     This is done automatically using selectionHalos. You can set that so
>     that it toggles on/off (selected/not selected) with each click using
>
>     set selectionhalos on
>     set picking select
>
>     Great! Let us know if you have any more problems or just ideas for
>     that
>     implementation. Please be sure to use 11.5, not 11.4 for your
>     implementation. The API changed a little bit.
>
>     Bob
>
>
>     Brian Ramos wrote:
>
>     > Hi,
>     >
>     > I am including a JmolViewer in one of my applications and I can't
>     > figure out a simple way to graphically highlight atoms that are
>     > clicked on by a user (and unhighlight them when clicked again).
>      I've
>     > been using a JmolStatusListener to acquire most of the data I
>     need. Is
>     > there an api interface that I can use to get this done?
>     >
>     > Thanks.
>     >
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>     --
>     Robert M. Hanson
>     Professor of Chemistry
>     St. Olaf College
>     Northfield, MN
>     http://www.stolaf.edu/people/hansonr
>
>
>     If nature does not answer first what we want,
>     it is better to take what answer we get.
>
>     -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
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-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get. 

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900