From: josh <jbu...@gm...> - 2009-11-29 21:56:00
Attachments:
jmol_rendering_error.jpg
tryptamine__.mol
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Hi, when I use jmol+povray to render high quality images an interesting thing happens. At lower resolutions everything's fine. If I up the res to 1000 pixels wide, then some of the sticks in the molecule start disappearing in the rendered image. The higher the res, the more sticks are missing. At 2000 pixels width, all the sticks are gone. Attached are images and the mol file (do attachments work in this list?) Thanks in advance for any tips. Or should I just file a bug report, Bob? cheers Josh Buhl |
From: Robert H. <ha...@st...> - 2009-11-30 14:33:25
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This is fixed for Jmol 11.9.10 and Jmol 11.8.12. It will be a problem with earlier versions whenever you use width/height parameters that are different from the actual window screen. So if you need this now, first set your screen width/height to the desired parameters, then create the export. Bob On Sun, Nov 29, 2009 at 3:55 PM, josh <jbu...@gm...> wrote: > Hi, > > when I use jmol+povray to render high quality images an interesting > thing happens. At lower resolutions everything's fine. If I up the res > to 1000 pixels wide, then some of the sticks in the molecule start > disappearing in the rendered image. The higher the res, the more sticks > are missing. At 2000 pixels width, all the sticks are gone. > > Attached are images and the mol file (do attachments work in this list?) > > Thanks in advance for any tips. Or should I just file a bug report, Bob? > > cheers > > Josh Buhl > > > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day > trial. Simplify your report design, integration and deployment - and focus > on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |
From: josh <jbu...@gm...> - 2009-11-30 16:18:45
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Hi Bob, thanks for your speedy reply. If I understand you correctly, this means that I need to resize the jmol application window to the size that I'm exporting to, then I can render at that size. I tried this, and it works. But what if I need resolutions that are larger than my screen size (e.g. for printing)? cheerios and wheaties -j Robert Hanson wrote: > This is fixed for Jmol 11.9.10 and Jmol 11.8.12. > It will be a problem with earlier versions whenever you use width/height > parameters that are different from the actual window screen. So if you > need this now, first set your screen width/height to the desired > parameters, then create the export. > > Bob > > On Sun, Nov 29, 2009 at 3:55 PM, josh <jbu...@gm... > <mailto:jbu...@gm...>> wrote: > > Hi, > > when I use jmol+povray to render high quality images an interesting > thing happens. At lower resolutions everything's fine. If I up the res > to 1000 pixels wide, then some of the sticks in the molecule start > disappearing in the rendered image. The higher the res, the more sticks > are missing. At 2000 pixels width, all the sticks are gone. > > Attached are images and the mol file (do attachments work in this list?) > > Thanks in advance for any tips. Or should I just file a bug report, Bob? > > cheers > > Josh Buhl > |
From: Robert H. <ha...@st...> - 2009-11-30 17:12:24
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Josh, I'm uploading the fix now. I was just saying that if you want it for Jmol 11.8 immediately, then you need that workaround. Jmol 11.9.11_dev is now available at http://chemapps.stolaf.edu/jmol/docs/examples-11/Jmol-11.jar so you can just use that if you want, and it should behave properly. This also incorporates Jonathan's mesh issue. (and preliminary multi-touch capability) Bob On Mon, Nov 30, 2009 at 10:18 AM, josh <jbu...@gm...> wrote: > Hi Bob, > > thanks for your speedy reply. > > If I understand you correctly, this means that I need to resize the jmol > application window to the size that I'm exporting to, then I can render > at that size. I tried this, and it works. But what if I need resolutions > that are larger than my screen size (e.g. for printing)? > > cheerios and wheaties > > -j > > > Robert Hanson wrote: > > This is fixed for Jmol 11.9.10 and Jmol 11.8.12. > > It will be a problem with earlier versions whenever you use width/height > > parameters that are different from the actual window screen. So if you > > need this now, first set your screen width/height to the desired > > parameters, then create the export. > > > > Bob > > > > On Sun, Nov 29, 2009 at 3:55 PM, josh <jbu...@gm... > > <mailto:jbu...@gm...>> wrote: > > > > Hi, > > > > when I use jmol+povray to render high quality images an interesting > > thing happens. At lower resolutions everything's fine. If I up the > res > > to 1000 pixels wide, then some of the sticks in the molecule start > > disappearing in the rendered image. The higher the res, the more > sticks > > are missing. At 2000 pixels width, all the sticks are gone. > > > > Attached are images and the mol file (do attachments work in this > list?) > > > > Thanks in advance for any tips. Or should I just file a bug report, > Bob? > > > > cheers > > > > Josh Buhl > > > > > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day > trial. Simplify your report design, integration and deployment - and focus > on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |