I had just this problem recently and all I needed was here
All the best
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On 18 Nov 2006, at 20:11, jmol-users-request@...
> Message: 7
> Date: Sat, 18 Nov 2006 10:08:47 CST
> From: Balram Suman <suma0021@...>
> Subject: [Jmol-users] bonds between desired atoms
> To: jmol-users@...
> Message-ID: <200611181608.kAIG8lKQ028434@...>
> Content-Type: TEXT/plain; CHARSET=US-ASCII
> Hi all,
> Can anyone help me in making bonds between two desired atoms in
> Jmol and I do
> not want any automatic bonds? I would like to say that I am making
> movies. If
> anyone interested, I can send my (x,y,z) for all atoms at different
> times and
> then, connectivity matrix.
> Please help as its urgent.