hrmmmm strange.† The online version is working just fine but it doesn't seem to want to work from my stock .jar that I have(i DLed the binary version to be sure) in addition to not working on the version I'm compiling through eclipse.† I tried clearing Java's cache but that doesn't seem to work......†† is there any cache in eclipse that has to be purged?

On Sun, May 20, 2012 at 7:29 PM, Bob Hanson <hansonr@stolaf.edu> wrote:
Are you doing this in eclipse? Or using Jmol.jar? †Are you doing the compiling? Maybe you are not getting clean compiling. † Please try it at http://chemapps.stolaf.edu/jmol/docs/examples-12/simple2.htm † You can just drag drop files into that.†

Sent from my stupid iphone

On May 20, 2012, at 3:52 PM, Andrew Long <andrew.long.3001@gmail.com> wrote:

I've attached the azide that also seems to cause this with just the isosurface molecular.

On Sun, May 20, 2012 at 5:49 PM, Andrew Long <andrew.long.3001@gmail.com> wrote:
yep is that not happening with you?(i haven't added in your recent patch)


On Sun, May 20, 2012 at 5:46 PM, Robert Hanson <hansonr@stolaf.edu> wrote:
so start over with me. I didn't do any fix there. I just read the file. So let's just do this again.

load methylisocyanate.mol2
isosurface molecular

that by itself gives you a fragmented surface?

Bob


On Sun, May 20, 2012 at 3:34 PM, Andrew Long <andrew.long.3001@gmail.com> wrote:
Awesome Thanks again.† The exact commands i used was.....

load filename.mol2
isosurface molecular
dots † † † † † † † † † † † † † † † † †† //for comparison.

The dots command seems to lay out the surface perfectly but the isosurface command seems to have issues with the linear hetero atoms.† I recreated this in the stock binary version. 12.2.22.

and just to check in with my isosurface project and I've managed to produce some rather excellent pictures from it.

http://imgur.com/zbcFi

this is ~800 data points upscaled to 6200 vertexs using a radial weighted average using a gaussian function as the weighting function.

On Sun, May 20, 2012 at 5:16 PM, Robert Hanson <hansonr@stolaf.edu> wrote:
ah -- it's not magic! Thanks, Angel...


On Sun, May 20, 2012 at 2:53 PM, Angel HerrŠez <angel.herraez@uah.es> wrote:
I forwarded it from the admin control page. The message was stopped there due to its large
attachment


On 20 May 2012 at 14:23, Robert Hanson wrote:

>
> Andrew -- don't worry about the bounce. I got it. (Funny -- I hadn't realized that since I see the
> bounce reports anyway, anyone can send me large files by this list!)


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St. Olaf College
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phone: 507-786-3107


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-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900

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Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900

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threat landscape has changed and how IT managers can respond. Discussions
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<methylazide.mol2>
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