Commit [r2322] Maximize Restore History

changed alignment resource loading from loading file to loading inputStream. getting the resource as a file doesn't work once Jillion has been jarred up.

dkatzel 2014-06-17

changed /branch/Jillion_4_jdk6/src/org/jcvi/jillion/align/AminoAcidSubstitutionMatrixFileParser.java
changed /branch/Jillion_4_jdk6/src/org/jcvi/jillion/align/BlosumMatrices.java
changed /branch/Jillion_4_jdk6/src/org/jcvi/jillion/align/NucleotidePropertyFileScoringMatrixParser.java
changed /branch/Jillion_4_jdk6/src/org/jcvi/jillion/align/NucleotideSubstitutionMatrices.java
/branch/Jillion_4_jdk6/src/org/jcvi/jillion/align/AminoAcidSubstitutionMatrixFileParser.java Diff Switch to side-by-side view
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/branch/Jillion_4_jdk6/src/org/jcvi/jillion/align/BlosumMatrices.java Diff Switch to side-by-side view
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/branch/Jillion_4_jdk6/src/org/jcvi/jillion/align/NucleotidePropertyFileScoringMatrixParser.java Diff Switch to side-by-side view
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/branch/Jillion_4_jdk6/src/org/jcvi/jillion/align/NucleotideSubstitutionMatrices.java Diff Switch to side-by-side view
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