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Commit [r2264] Maximize Restore History

fixed Checkstyle warnings

dkatzel 2014-03-20

changed /trunk/src/org/jcvi/jillion/assembly/consed/ConsedUtil.java
changed /trunk/src/org/jcvi/jillion/assembly/consed/ace/AceFileUtil.java
changed /trunk/src/org/jcvi/jillion/assembly/consed/phd/PhdUtil.java
changed /trunk/src/org/jcvi/jillion/assembly/consed/transform/ConsedTransformationService.java
changed /trunk/src/org/jcvi/jillion/assembly/tigr/tasm/TasmUtil.java
changed /trunk/src/org/jcvi/jillion/sam/BamFileParser.java
changed /trunk/src/org/jcvi/jillion/sam/BgzfOutputStream.java
changed /trunk/src/org/jcvi/jillion/sam/SamFileParser.java
changed /trunk/src/org/jcvi/jillion/sam/SamUtil.java
changed /trunk/src/org/jcvi/jillion/sam/attribute/ReservedSamAttributeKeys.java
changed /trunk/src/org/jcvi/jillion/trace/chromat/abi/AbiChromatogramParser.java
/trunk/src/org/jcvi/jillion/assembly/consed/ConsedUtil.java Diff Switch to side-by-side view
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/trunk/src/org/jcvi/jillion/assembly/consed/ace/AceFileUtil.java Diff Switch to side-by-side view
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/trunk/src/org/jcvi/jillion/assembly/consed/phd/PhdUtil.java Diff Switch to side-by-side view
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/trunk/src/org/jcvi/jillion/assembly/consed/transform/ConsedTransformationService.java Diff Switch to side-by-side view
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/trunk/src/org/jcvi/jillion/assembly/tigr/tasm/TasmUtil.java Diff Switch to side-by-side view
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/trunk/src/org/jcvi/jillion/sam/BamFileParser.java Diff Switch to side-by-side view
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/trunk/src/org/jcvi/jillion/sam/BgzfOutputStream.java Diff Switch to side-by-side view
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/trunk/src/org/jcvi/jillion/sam/SamFileParser.java Diff Switch to side-by-side view
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/trunk/src/org/jcvi/jillion/sam/SamUtil.java Diff Switch to side-by-side view
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/trunk/src/org/jcvi/jillion/sam/attribute/ReservedSamAttributeKeys.java Diff Switch to side-by-side view
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/trunk/src/org/jcvi/jillion/trace/chromat/abi/AbiChromatogramParser.java Diff Switch to side-by-side view
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